Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 7.7e-168 594.0 320 100.0
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.7e-138 496.5 322 86.3
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.6e-123 446.0 322 75.2
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 6.0e-120 434.9 364 70.9
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 3.3e-110 402.5 325 72.9
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 3.6e-109 399.1 335 71.6
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 4.7e-109 398.7 323 72.8
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 6.2e-109 398.3 325 73.5
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.8e-108 396.7 328 71.6
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.2e-107 394.0 319 74.0
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.4e-107 392.5 335 69.6
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 9.9e-107 391.0 322 71.4
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.3e-106 390.6 326 72.7
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 2.2e-106 389.8 347 67.7
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 2.2e-106 389.8 322 73.0
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.8e-106 389.0 334 71.0
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 8.4e-106 387.9 337 70.3
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 8.4e-106 387.9 329 72.0
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.1e-105 387.5 326 69.3
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.9e-105 386.7 329 71.4
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.4e-105 386.3 333 70.3
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 4.2e-105 385.6 327 69.7
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.2e-104 384.0 329 72.3
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 2.7e-104 382.9 250 79.6
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 6.0e-104 381.7 323 69.3
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.0e-103 380.9 323 69.7
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.0e-103 380.9 331 71.0
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.0e-103 380.9 331 68.0
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.7e-103 380.2 323 69.7
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 3.9e-103 379.0 327 70.6
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 6.6e-103 378.3 327 71.3
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 6.6e-103 378.3 321 71.3
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.1e-102 377.5 324 68.2
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.5e-102 377.1 329 67.8
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.5e-102 377.1 329 68.7
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.9e-102 376.7 322 69.9
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.5e-102 376.3 325 70.5
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 3.3e-102 375.9 330 68.8
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.3e-102 375.9 316 69.6
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 5.6e-102 375.2 326 68.4
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 5.6e-102 375.2 328 65.9
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 9.6e-102 374.4 331 68.3
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 9.6e-102 374.4 331 68.3
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 9.6e-102 374.4 329 69.9
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.6e-101 373.6 354 65.0
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.1e-100 370.9 333 67.9
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 2.0e-99 366.7 324 71.0
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 2.6e-99 366.3 316 70.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.6e-99 366.3 324 68.8
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 5.8e-99 365.2 335 62.7
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 8.4e-98 361.3 347 66.3
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 8.4e-98 361.3 347 66.3
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 8.4e-98 361.3 248 77.0
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 3.2e-97 359.4 326 66.3
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 3.2e-97 359.4 326 66.3
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 4.2e-97 359.0 284 68.7
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 1.6e-96 357.1 328 66.2
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.5e-96 355.9 325 68.3
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.7e-95 353.6 324 64.2
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.7e-95 353.6 350 62.9
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 1.7e-95 353.6 325 67.1
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 5.1e-95 352.1 323 64.4
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.1e-94 350.9 319 67.1
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 5.6e-94 348.6 323 63.2
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 2.1e-93 346.7 320 63.4
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.1e-92 344.4 325 66.8
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 3.1e-92 342.8 331 63.7
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.5e-91 340.5 338 60.4
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.0e-91 340.1 253 70.4
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 3.4e-91 339.3 330 66.4
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 3.4e-91 339.3 322 63.7
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.3e-90 337.4 323 65.0
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.7e-90 337.0 242 74.0
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.8e-90 335.9 323 60.7
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 8.4e-90 334.7 329 65.0
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.1e-89 334.3 251 72.9
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.9e-89 333.6 320 62.2
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 2.4e-89 333.2 329 60.8
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 1.2e-88 330.9 331 62.8
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 1.6e-88 330.5 331 63.1
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 6.0e-88 328.6 331 63.1
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 6.0e-88 328.6 329 63.2
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 7.9e-88 328.2 327 63.0
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 3.9e-87 325.9 323 65.0
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.5e-86 323.9 332 60.8
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.9e-86 323.6 256 71.1
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.6e-85 320.5 356 58.4
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 6.9e-84 315.1 326 64.4
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 2.6e-83 313.2 216 76.4
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 3.4e-83 312.8 251 68.5
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 7.1e-81 305.1 215 78.1
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.7e-80 303.1 300 59.0
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 9.6e-78 294.7 397 50.1
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.3e-77 294.3 326 55.8
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.6e-77 293.9 214 76.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 3.7e-77 292.7 350 55.4
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 1.0e-74 284.6 229 71.6
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.5e-74 282.0 327 58.7
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 8.4e-74 281.6 340 54.7
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.9e-73 280.4 249 63.1
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.9e-73 280.4 241 63.5
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.2e-73 279.3 320 53.8
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 5.5e-73 278.9 218 72.9
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 5.5e-73 278.9 335 52.5
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 9.3e-73 278.1 242 64.9
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.2e-72 277.7 227 67.8
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.3e-71 273.5 255 60.0
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 3.0e-71 273.1 331 52.6
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.1e-70 271.2 200 74.5
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 5.7e-70 268.9 333 54.4
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.7e-70 268.1 238 62.2
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 3.7e-69 266.2 331 56.2
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 3.1e-68 263.1 342 53.5
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.5e-67 260.8 215 73.0
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.6e-67 260.0 336 57.1
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.7e-66 257.3 328 56.7
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 3.2e-65 253.1 189 75.1
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 7.2e-65 251.9 320 50.3
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 2.0e-62 243.8 326 53.7
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 2.0e-62 243.8 326 53.7
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 4.1e-60 236.1 254 56.7
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 4.1e-60 236.1 254 56.7
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 9.1e-60 235.0 254 56.7
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 3.0e-55 219.9 326 50.3
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.5e-51 207.6 215 61.4
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.4e-47 194.5 262 45.4
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 8.5e-42 175.3 149 68.5
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.2e-37 160.6 217 50.7
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.8e-37 160.2 132 71.2
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.1e-36 158.3 97 83.5
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 2.9e-26 123.6 151 45.7
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 3.8e-26 123.2 132 46.2
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 2.8e-24 117.1 148 41.2
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.7e-24 116.3 211 43.6
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.0e-23 113.6 115 47.8
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 9.8e-22 108.6 156 38.5
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 1.3e-21 108.2 114 64.0
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.8e-20 104.4 107 60.7
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.1e-20 103.2 114 45.6
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 7.8e-19 99.0 104 53.8
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 8.6e-18 95.5 130 38.5
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 4.3e-17 93.2 124 56.5
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 4.7e-16 89.7 112 59.8
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 8.0e-16 89.0 120 57.5
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 2.9e-13 80.5 119 58.0
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 3.2e-12 77.0 145 49.0
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 4.6e-11 73.2 49 65.3
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.5e-09 65.5 36 83.3
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 1.5e-06 58.2 124 38.7
TAR636G2488 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.0e-06 57.8 27 92.6
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.6e-06 57.4 94 47.9
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 9.8e-06 55.5 115 33.9


User provided reference genes

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