Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 1.1e-150 538.5 1043 100.0
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 8.9e-79 299.7 367 69.2
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 8.6e-74 283.1 367 67.6
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 3.1e-63 248.1 367 64.3
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 1.9e-60 238.8 370 64.3
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 5.4e-60 237.3 369 65.0
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 1.5e-57 229.2 326 67.8
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 1.9e-57 228.8 375 62.7
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 2.6e-54 218.4 378 61.1
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 7.6e-54 216.9 350 62.0
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 4.2e-52 211.1 376 60.6
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 9.3e-52 209.9 376 60.4
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 2.3e-50 205.3 376 59.8
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 3.6e-48 198.0 325 62.2
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 2.0e-46 192.2 186 55.4
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 1.7e-45 189.1 366 59.0
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 2.1e-43 182.2 307 63.5
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 2.1e-43 182.2 304 64.8
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 1.8e-42 179.1 366 57.9
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 2.3e-42 178.7 304 64.5
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 2.3e-42 178.7 353 58.1
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 1.5e-41 176.0 326 62.3
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 1.5e-41 176.0 325 60.6
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 3.3e-41 174.9 346 58.1
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 3.3e-41 174.9 346 58.1
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 1.3e-40 172.9 309 64.7
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 8.1e-40 170.2 338 59.8
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 1.8e-39 169.1 332 60.8
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 3.1e-39 168.3 307 63.5
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 3.2e-36 158.3 309 61.5
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 1.2e-35 156.4 173 49.1
Aqoxy5G04288 Aquilegia oxysepala HOM05D007570 ORTHO05D009365 2.1e-35 155.6 373 56.0
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 7.9e-35 153.7 358 39.4
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 1.3e-34 152.9 350 60.0
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.8e-34 152.5 200 45.0
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 2.3e-34 152.1 316 45.9
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 3.9e-34 151.4 186 44.6
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 8.7e-34 150.2 344 37.5
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 1.9e-33 149.1 308 36.0
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 4.3e-33 147.9 162 48.8
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 5.7e-33 147.5 391 35.5
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 1.3e-32 146.4 312 43.6
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 6.3e-32 144.1 316 39.2
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 1.8e-31 142.5 189 43.4
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 2.4e-31 142.1 312 45.5
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 2.0e-30 139.0 342 35.7
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 4.5e-30 137.9 227 76.2
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 5.9e-30 137.5 204 40.2
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 5.0e-29 134.4 308 34.7
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 1.6e-27 129.4 189 43.4
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 1.3e-26 126.3 282 39.7
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 1.3e-26 126.3 334 37.7
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 2.5e-25 122.1 363 34.4
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 2.5e-25 122.1 352 36.6
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 2.2e-24 119.0 307 53.7
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 2.4e-23 115.5 136 46.3
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 3.1e-23 115.2 172 39.0
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 5.3e-23 114.4 345 58.0
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 2.0e-22 112.5 107 57.9
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 2.6e-22 112.1 355 28.7
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 2.6e-22 112.1 188 37.2
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 3.4e-22 111.7 201 41.8
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 5.9e-22 110.9 201 40.3
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 1.4e-20 106.3 201 37.3
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 7.2e-20 104.0 199 37.7
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.6e-19 102.8 274 33.6
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 6.1e-19 100.9 140 38.6
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 1.0e-18 100.1 272 40.4
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 1.5e-17 96.3 187 40.1
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 2.0e-17 95.9 122 45.1
HanXRQChr10g0294781 Helianthus annuus HOM05D007570 ORTHO05D009365 2.8e-16 92.0 121 43.8
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 4.8e-16 91.3 188 41.0
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 4.8e-16 91.3 188 41.0
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 6.3e-16 90.9 122 44.3
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 8.2e-16 90.5 277 33.6
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 8.2e-16 90.5 142 42.3
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 1.4e-15 89.7 188 39.9
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 2.4e-15 89.0 140 40.7
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 3.1e-15 88.6 188 39.4
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 6.9e-15 87.4 65 63.1
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 9.1e-15 87.0 201 37.3
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 1.5e-14 86.3 65 61.5
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 2.0e-14 85.9 65 61.5
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 3.4e-14 85.1 99 45.5
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 4.5e-14 84.7 188 37.8
Haze_00350 Corylus avellana HOM05D007570 ORTHO05D009365 2.9e-13 82.0 101 49.5
CsaV3_2G035920 Cucumis sativus L. HOM05D021906 ORTHO05D009365 9.4e-12 77.0 63 60.3
MELO3C024749.2 Cucumis melo HOM05D021906 ORTHO05D009365 6.1e-11 74.3 63 58.7
Aa31LG11G14690 Aethionema arabicum HOM05D007570 ORTHO05D009365 3.0e-10 72.0 56 57.1
Oeu043366.2 Olea europaea HOM05D007570 ORTHO05D009365 3.0e-10 72.0 86 45.3
AUR62028022 Chenopodium quinoa HOM05D007570 ORTHO05D009365 1.5e-09 69.7 62 53.2
Lj5C430G7 Lonicera japonica HOM05D007570 ORTHO05D009365 2.0e-09 69.3 57 56.1
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 7.4e-09 67.4 45 60.0
CDE06G1092 Ceratophyllum demersum HOM05D007570 ORTHO05D008530 1.7e-08 66.2 219 63.9
GSVIVG01013840001 Vitis vinifera HOM05D007570 ORTHO05D009365 1.7e-08 66.2 47 61.7
FAN10G4006 Fragaria x ananassa HOM05D007570 ORTHO05D009365 3.7e-08 65.1 72 48.6
ATR0680G349 Amborella trichopoda HOM05D007570 ORTHO05D009365 8.2e-08 63.9 47 61.7
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 8.2e-08 63.9 47 61.7
ECA234G3939 Erigeron canadensis HOM05D007570 ORTHO05D009365 4.1e-07 61.6 45 51.1
Glyma.13G181601 Glycine max HOM05D007570 ORTHO05D009365 1.2e-06 60.1 48 58.3
ClCG02G007820 Citrullus lanatus HOM05D021906 ORTHO05D009365 1.6e-06 59.7 50 54.0
SalBow3G4252 Salvia bowleyana HOM05D007570 ORTHO05D009365 2.0e-06 59.3 48 45.8


User provided reference genes

Program Settings