Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 1.7e-95 352.8 197 100.0
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.4e-25 119.8 188 38.8
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 4.5e-24 115.5 141 46.1
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.3e-23 114.0 197 42.1
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 6.5e-23 111.7 182 39.6
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 1.4e-22 110.5 191 38.7
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.4e-20 104.0 147 44.2
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 1.5e-19 100.5 184 37.0
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 9.7e-19 97.8 139 42.4
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 3.7e-18 95.9 144 38.2
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 4.8e-18 95.5 197 34.5
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 7.0e-17 91.7 140 38.6
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 7.0e-17 91.7 69 59.4
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 2.0e-16 90.1 143 39.2
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 2.0e-16 90.1 141 39.0
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.6e-16 89.7 147 40.1
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 3.5e-16 89.4 146 40.4
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 4.5e-16 89.0 135 40.0
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 4.5e-16 89.0 80 50.0
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 5.9e-16 88.6 143 39.9
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 1.0e-15 87.8 148 40.5
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 1.0e-15 87.8 141 38.3
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 1.3e-15 87.4 66 56.1
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.2e-15 86.7 147 38.8
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 2.2e-15 86.7 143 35.7
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 2.9e-15 86.3 151 37.7
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 8.5e-15 84.7 105 47.6
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 8.5e-15 84.7 138 37.7
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 8.5e-15 84.7 147 36.1
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 8.5e-15 84.7 81 43.2
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 1.1e-14 84.3 150 34.7
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 1.5e-14 84.0 62 58.1
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 1.9e-14 83.6 138 37.0
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 1.9e-14 83.6 144 37.5
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 2.5e-14 83.2 134 39.6
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 2.5e-14 83.2 147 36.1
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 2.5e-14 83.2 67 52.2
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 3.2e-14 82.8 67 50.7
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 5.5e-14 82.0 147 35.4
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 5.5e-14 82.0 143 34.3
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 9.4e-14 81.3 138 34.8
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 6.1e-13 78.6 135 37.0
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 1.4e-12 77.4 138 36.2
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 1.4e-12 77.4 139 36.7
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 1.4e-12 77.4 127 35.4
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 2.3e-12 76.6 136 39.7
SGA_v2.0_scaffold5G03086 Striga asiatica HOM05D007511 ORTHO05D003753 3.0e-12 76.3 67 49.3
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 3.9e-12 75.9 89 41.6
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 5.2e-12 75.5 131 35.9
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 5.2e-12 75.5 139 35.3
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 6.7e-12 75.1 188 30.3
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 1.1e-11 74.3 144 31.2
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 1.1e-11 74.3 144 31.2
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 1.1e-11 74.3 137 38.7
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 1.1e-11 74.3 67 44.8
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 1.1e-11 74.3 101 37.6
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 1.1e-11 74.3 136 38.2
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 1.1e-11 74.3 190 30.0
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 1.5e-11 73.9 148 33.1
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 2.0e-11 73.6 134 34.3
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 2.6e-11 73.2 62 50.0
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 2.6e-11 73.2 146 34.9
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 2.6e-11 73.2 199 34.7
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 3.3e-11 72.8 144 34.7
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 4.4e-11 72.4 134 36.6
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 5.7e-11 72.0 148 35.8
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 7.4e-11 71.6 139 34.5
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 9.7e-11 71.2 138 35.5
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 9.7e-11 71.2 76 46.1
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 1.3e-10 70.9 139 33.1
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 1.3e-10 70.9 139 33.1
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 1.3e-10 70.9 140 35.0
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 1.3e-10 70.9 154 31.8
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 1.3e-10 70.9 154 32.5
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 1.7e-10 70.5 140 35.0
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 1.7e-10 70.5 138 34.8
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 6.3e-10 68.6 144 35.4
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 8.2e-10 68.2 138 34.1
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 8.2e-10 68.2 138 34.1
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 1.1e-09 67.8 69 44.9
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 1.4e-09 67.4 68 44.1
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 1.8e-09 67.0 104 37.5
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 2.4e-09 66.6 140 35.7
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 2.4e-09 66.6 138 31.9
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 2.4e-09 66.6 93 37.6
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 2.4e-09 66.6 93 37.6
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 2.4e-09 66.6 90 37.8
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 3.1e-09 66.2 66 42.4
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 3.1e-09 66.2 71 43.7
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 4.1e-09 65.9 98 37.8
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 4.1e-09 65.9 98 37.8
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 7.0e-09 65.1 142 31.0
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 7.0e-09 65.1 127 30.7
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 7.0e-09 65.1 75 37.3
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 7.0e-09 65.1 120 37.5
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 9.1e-09 64.7 74 44.6
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.2e-08 64.3 72 41.7
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 1.2e-08 64.3 88 36.4
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.2e-08 64.3 66 42.4
CSS0038510 Camellia sinensis var. sinensis HOM05D007511 ORTHO05D003753 1.6e-08 63.9 71 39.4
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 1.6e-08 63.9 74 44.6
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 2.0e-08 63.5 74 45.9
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 2.6e-08 63.2 137 34.3
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 2.6e-08 63.2 58 48.3
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 3.5e-08 62.8 101 36.6
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 3.5e-08 62.8 101 36.6
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 4.5e-08 62.4 139 31.7
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 5.9e-08 62.0 74 44.6
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 5.9e-08 62.0 112 37.5
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 5.9e-08 62.0 136 30.9
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 7.7e-08 61.6 56 48.2
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 1.3e-07 60.8 58 50.0
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 1.7e-07 60.5 138 31.2
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 1.7e-07 60.5 67 35.8
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 1.7e-07 60.5 64 46.9
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.2e-07 60.1 68 39.7
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 2.2e-07 60.1 56 46.4
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 3.8e-07 59.3 167 33.5
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 3.8e-07 59.3 142 30.3
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 5.0e-07 58.9 137 31.4
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 6.5e-07 58.5 76 38.2
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 8.5e-07 58.2 66 42.4
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 1.1e-06 57.8 67 41.8
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 1.5e-06 57.4 58 46.6
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.5e-06 57.4 168 33.9
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 1.9e-06 57.0 66 42.4
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 1.9e-06 57.0 66 42.4
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 1.9e-06 57.0 136 31.6
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 1.9e-06 57.0 58 43.1
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 2.5e-06 56.6 58 43.1
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 4.2e-06 55.8 139 30.9
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 4.2e-06 55.8 139 30.9
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 4.2e-06 55.8 56 44.6
SGA_v2.0_scaffold95G28750 Striga asiatica HOM05D007511 ORTHO05D003753 5.5e-06 55.5 88 35.2
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 7.2e-06 55.1 65 41.5
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 7.2e-06 55.1 65 41.5
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 9.4e-06 54.7 70 35.7
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 9.4e-06 54.7 62 37.1
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 9.4e-06 54.7 68 36.8
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 9.4e-06 54.7 66 39.4


User provided reference genes

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