Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.1e-54 216.5 114 100.0
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 6.8e-49 197.2 114 90.4
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 2.9e-47 191.8 112 86.6
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.7e-47 191.4 114 85.1
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 3.7e-47 191.4 114 85.1
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.9e-47 191.0 114 86.8
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 8.3e-47 190.3 114 85.1
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.4e-46 189.5 113 86.7
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.4e-46 188.7 114 86.0
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 5.4e-46 187.6 114 83.3
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 7.0e-46 187.2 114 85.1
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 9.2e-46 186.8 114 84.2
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.2e-45 186.4 114 84.2
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 2.0e-45 185.7 114 84.2
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 2.7e-45 185.3 112 86.6
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.5e-45 184.9 114 83.3
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 3.5e-45 184.9 114 83.3
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 6.0e-45 184.1 114 81.6
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.0e-44 183.3 114 82.5
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.3e-44 183.0 109 85.3
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 82.5
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.3e-44 182.2 112 83.0
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 3.0e-44 181.8 114 81.6
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 79.8
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 80.7
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 5.0e-44 181.0 112 81.2
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.6e-44 180.6 114 81.6
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.6e-44 180.6 114 81.6
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 8.6e-44 180.3 115 82.6
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 79.8
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 8.6e-44 180.3 112 81.2
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.1e-43 179.9 115 82.6
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.1e-43 179.9 115 82.6
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.1e-43 179.9 115 82.6
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.1e-43 179.9 115 82.6
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 80.7
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 78.1
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 78.1
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 78.9
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 79.8
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.3e-43 178.3 112 81.2
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.3e-43 177.9 114 78.1
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 82.6
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 78.1
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 7.3e-43 177.2 110 81.8
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 7.3e-43 177.2 115 81.7
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 78.1
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 78.1
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 9.5e-43 176.8 112 78.6
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 78.1
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 9.5e-43 176.8 115 80.9
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 80.7
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 78.6
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 79.5
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 82.5
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 79.8
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.8e-42 175.3 113 79.6
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 80.7
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 75.4
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 3.6e-42 174.9 115 79.1
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 79.8
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 4.7e-42 174.5 115 80.0
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 78.9
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.1
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.1
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.1
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.1
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 75.4
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 77.2
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.1e-41 173.3 104 87.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.1e-41 173.3 112 75.9
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 77.2
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.4e-41 172.9 113 79.6
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.4e-41 172.9 115 77.4
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 3.1e-41 171.8 142 68.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 76.3
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 77.2
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 79.8
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 5.2e-41 171.0 112 78.6
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 6.8e-41 170.6 109 78.9
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 79.8
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 75.4
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 74.6
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 2.0e-40 169.1 104 81.7
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 75.4
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 77.2
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 77.2
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.7e-39 166.0 108 78.7
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.7e-39 166.0 104 81.7
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.9e-39 165.2 112 76.8
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 3.7e-39 164.9 112 73.2
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 71.9
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 3.7e-39 164.9 115 74.8
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 6.4e-39 164.1 108 77.8
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 8.3e-39 163.7 146 65.1
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 74.6
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 74.6
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 74.6
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 74.6
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.4e-38 162.2 114 74.6
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.4e-38 162.2 114 73.7
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 74.6
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 4.1e-38 161.4 104 79.8
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 5.4e-38 161.0 115 73.0
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.4e-38 161.0 145 61.4
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 7.1e-38 160.6 114 73.7
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 7.1e-38 160.6 114 73.7
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 7.8e-37 157.1 112 73.2
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 5.1e-36 154.5 114 71.1
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 5.1e-36 154.5 114 71.1
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.3e-33 145.6 84 88.1
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 3.1e-33 145.2 80 91.2
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 8.9e-33 143.7 114 66.7
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.2e-32 143.3 90 80.0
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 2.0e-32 142.5 80 90.0
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 5.8e-32 141.0 79 89.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 9.9e-32 140.2 77 92.2
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 6.4e-31 137.5 100 72.0
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 8.4e-31 137.1 114 64.0
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.1e-30 136.7 77 90.9
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.4e-30 135.6 92 77.2
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 4.1e-30 134.8 111 63.1
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 79.5
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 79.5
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 3.3e-27 125.2 75 84.0
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.6e-26 122.9 72 86.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 5.2e-25 117.9 65 90.8
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.5e-24 116.3 112 57.1
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.7e-23 112.8 77 72.7
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 4.9e-23 111.3 106 51.9
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 2.4e-22 109.0 114 55.3
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 7.1e-22 107.5 67 79.1
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 3.5e-21 105.1 77 70.1
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 7.8e-21 104.0 98 58.2
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.7e-20 102.8 77 68.8
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.5e-19 99.0 102 52.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.6e-18 96.3 63 74.6
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.6e-18 96.3 111 45.0
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 2.1e-18 95.9 65 73.8
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 3.8e-15 85.1 106 46.2
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.8e-15 85.1 76 53.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.4e-15 84.3 48 87.5
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 8.4e-15 84.0 55 80.0
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.4e-14 83.2 95 52.6
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 2.4e-14 82.4 51 84.3
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.2e-14 81.6 45 91.1
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 9.3e-14 80.5 104 44.2
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 2.1e-13 79.3 43 90.7
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 3.5e-13 78.6 55 76.4
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 4.6e-13 78.2 50 80.0
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.8e-12 76.3 43 86.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.8e-12 76.3 92 51.1
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.9e-12 75.1 43 86.0
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 5.1e-12 74.7 51 76.5
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.7e-12 73.9 62 58.1
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-11 73.6 60 63.3
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.5e-11 73.2 92 46.7
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.4e-11 70.9 90 51.1
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 3.6e-10 68.6 95 40.0
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 8.1e-10 67.4 99 45.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 2.6e-08 62.4 97 43.3
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.4e-08 62.0 59 47.5


User provided reference genes

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