Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G146200 Manihot esculenta HOM05D000881 ORTHO05D000666 1.6e-82 309.3 152 100.0
Manes.09G138700 Manihot esculenta HOM05D000881 ORTHO05D000666 6.1e-29 131.3 130 57.7
Atru.chr2.1411 Acer truncatum HOM05D000881 ORTHO05D000666 1.6e-16 90.1 94 52.1
Potri.013G054800 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.9e-16 88.2 129 40.3
Manes.09G138800 Manihot esculenta HOM05D000881 ORTHO05D000666 7.8e-16 87.8 91 51.6
Potri.019G037700 Populus trichocarpa HOM05D000881 ORTHO05D000666 1.7e-15 86.7 129 41.1
THA.LOC104805773 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 2.3e-15 86.3 97 47.4
THA.LOC104800241 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 2.9e-15 85.9 97 47.4
SpUn0001_0960 Schrenkiella parvula HOM05D000881 ORTHO05D000666 1.9e-14 83.2 98 48.0
BcaB01g04224 Brassica carinata HOM05D000881 ORTHO05D000666 2.5e-14 82.8 107 43.9
Carub.0002s0956 Capsella rubella HOM05D000881 ORTHO05D000666 2.5e-14 82.8 96 46.9
CARHR055530 Cardamine hirsuta HOM05D000881 ORTHO05D000666 3.3e-14 82.4 106 43.4
DCAR_009079 Daucus carota HOM05D000881 ORTHO05D000666 3.3e-14 82.4 94 48.9
Duzib177G0536 Durio zibethinus HOM05D000881 ORTHO05D000666 4.3e-14 82.0 110 45.5
Actinidia37795 Actinidia chinensis HOM05D000881 ORTHO05D000666 9.5e-14 80.9 104 40.4
BcaC01g06208 Brassica carinata HOM05D000881 ORTHO05D000666 9.5e-14 80.9 107 43.9
A03p15510 Brassica napus HOM05D000881 ORTHO05D000666 9.5e-14 80.9 107 43.9
C03p18100 Brassica napus HOM05D000881 ORTHO05D000666 9.5e-14 80.9 107 43.9
BolC3t14213H Brassica oleracea HOM05D000881 ORTHO05D000666 9.5e-14 80.9 107 43.9
BraA03t10844Z Brassica rapa HOM05D000881 ORTHO05D000666 9.5e-14 80.9 107 43.9
Oeu044647.1 Olea europaea HOM05D000881 ORTHO05D000666 9.5e-14 80.9 114 46.5
BcaC06g31769 Brassica carinata HOM05D000881 ORTHO05D000666 1.2e-13 80.5 90 48.9
TWI34G1202 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 2.8e-13 79.3 94 46.8
AT1G54400 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 3.6e-13 79.0 89 48.3
Potri.013G054700 Populus trichocarpa HOM05D000881 ORTHO05D000666 4.7e-13 78.6 117 42.7
Actinidia03943 Actinidia chinensis HOM05D000881 ORTHO05D000666 8.0e-13 77.8 101 40.6
Aa31LG2G1880 Aethionema arabicum HOM05D000881 ORTHO05D000666 8.0e-13 77.8 106 43.4
Sabra13G0049100 Salix brachista HOM05D000881 ORTHO05D000666 8.0e-13 77.8 131 38.2
Sabra13G0049200 Salix brachista HOM05D000881 ORTHO05D000666 8.0e-13 77.8 131 38.2
Sabra13G0049300 Salix brachista HOM05D000881 ORTHO05D000666 8.0e-13 77.8 131 38.2
Rhsim03G0053200 Rhododendron simsii HOM05D000881 ORTHO05D000666 1.0e-12 77.4 98 40.8
CANSAT78G1545 Cannabis sativa HOM05D000881 ORTHO05D000666 1.4e-12 77.0 97 47.4
ClCG04G012640 Citrullus lanatus HOM05D000881 ORTHO05D000666 1.8e-12 76.6 103 45.6
Dinv03863 Davidia involucrata HOM05D000881 ORTHO05D000666 2.3e-12 76.3 157 36.3
Thhalv10023940m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 3.0e-12 75.9 89 48.3
QL10p034472 Quercus lobata HOM05D000881 ORTHO05D000666 4.0e-12 75.5 105 43.8
AL1G64700 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 6.8e-12 74.7 106 43.4
Ciclev10022272m.g Citrus clementina HOM05D000881 ORTHO05D000666 6.8e-12 74.7 102 47.1
Rhsim03G0053700 Rhododendron simsii HOM05D000881 ORTHO05D000666 6.8e-12 74.7 98 40.8
TWI60G0863 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 6.8e-12 74.7 103 42.7
Actinidia37794 Actinidia chinensis HOM05D000881 ORTHO05D000666 8.9e-12 74.3 104 43.3
Dinv11927 Davidia involucrata HOM05D000881 ORTHO05D000666 1.2e-11 73.9 105 41.9
MSTRG.10426 Avicennia marina HOM05D000881 ORTHO05D000666 1.5e-11 73.6 91 50.5
COL.COLO4_32969 Corchorus olitorius HOM05D000881 ORTHO05D000666 2.0e-11 73.2 142 36.6
Lalb_Chr14g0364621 Lupinus albus HOM05D000881 ORTHO05D000666 3.4e-11 72.4 104 38.5
Actinidia03944 Actinidia chinensis HOM05D000881 ORTHO05D000666 4.4e-11 72.0 106 45.3
CiPaw.16G038500 Carya illinoinensis HOM05D000881 ORTHO05D000666 4.4e-11 72.0 94 43.6
Dinv25100 Davidia involucrata HOM05D000881 ORTHO05D000666 4.4e-11 72.0 104 39.4
Rhsim03G0053300 Rhododendron simsii HOM05D000881 ORTHO05D000666 4.4e-11 72.0 98 38.8
arahy.Tifrunner.gnm1.ann1.Y8A2Y7 Arachis hypogaea HOM05D000881 ORTHO05D000666 5.7e-11 71.6 106 45.3
MELO3C001943.2 Cucumis melo HOM05D000881 ORTHO05D000666 5.7e-11 71.6 93 45.2
MD14G1004900 Malus domestica HOM05D000881 ORTHO05D000666 5.7e-11 71.6 164 34.8
arahy.Tifrunner.gnm1.ann1.J1HUHD Arachis hypogaea HOM05D000881 ORTHO05D000666 7.5e-11 71.2 102 46.1
vmacro07553 Vaccinium macrocarpon HOM05D000881 ORTHO05D000666 7.5e-11 71.2 92 39.1
Rhsim03G0053400 Rhododendron simsii HOM05D000881 ORTHO05D000666 9.8e-11 70.9 98 38.8
Sabra19G0049000 Salix brachista HOM05D000881 ORTHO05D000666 9.8e-11 70.9 92 44.6
Sed0019450 Sechium edule HOM05D000881 ORTHO05D000666 1.3e-10 70.5 98 40.8
Gohir.D13G167700 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.7e-10 70.1 100 39.0
Gorai.013G194400 Gossypium raimondii HOM05D000881 ORTHO05D000666 1.7e-10 70.1 100 39.0
Thecc.05G246200 Theobroma cacao HOM05D000881 ORTHO05D000666 1.7e-10 70.1 144 32.6
CSS0013808 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 2.9e-10 69.3 104 42.3
Gohir.D08G236060 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.9e-10 69.3 154 31.2
Gorai.004G251100 Gossypium raimondii HOM05D000881 ORTHO05D000666 2.9e-10 69.3 154 31.2
RcHm_v2.0_Chr3g0496561 Rosa chinensis HOM05D000881 ORTHO05D000666 2.9e-10 69.3 162 31.5
Gohir.A08G219200 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.7e-10 68.9 154 31.8
Gohir.A13G164900 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.7e-10 68.9 100 39.0
Migut.L01864 Erythranthe guttata HOM05D000881 ORTHO05D000666 4.9e-10 68.6 90 48.9
FvH4_7g04830 Fragaria vesca HOM05D000881 ORTHO05D000666 4.9e-10 68.6 166 33.1
FAN06G1651 Fragaria x ananassa HOM05D000881 ORTHO05D000666 4.9e-10 68.6 166 33.1
CSS0028596 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 6.4e-10 68.2 104 42.3
Haze_03560 Corylus avellana HOM05D021788 ORTHO05D000666 6.4e-10 68.2 94 41.5
Potri.013G054900 Populus trichocarpa HOM05D000881 ORTHO05D000666 6.4e-10 68.2 90 41.1
SGA_v2.0_scaffold392G50662 Striga asiatica HOM05D000881 ORTHO05D000666 6.4e-10 68.2 90 45.6
Gohir.D08G236100 Gossypium hirsutum HOM05D000881 ORTHO05D000666 8.3e-10 67.8 108 38.0
FAN03G2527 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.1e-09 67.4 165 30.9
Dinv05245 Davidia involucrata HOM05D000881 ORTHO05D000666 1.4e-09 67.0 101 43.6
Haze_03567 Corylus avellana HOM05D021788 ORTHO05D000666 1.8e-09 66.6 100 41.0
Thecc.05G246400 Theobroma cacao HOM05D000881 ORTHO05D000666 1.8e-09 66.6 90 46.7
CiPaw.16G038300 Carya illinoinensis HOM05D000881 ORTHO05D000666 2.4e-09 66.2 109 38.5
Gohir.A08G219300 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.4e-09 66.2 108 37.0
MD12G1007600 Malus domestica HOM05D000881 ORTHO05D000666 3.2e-09 65.9 117 35.9
Thecc.05G246300 Theobroma cacao HOM05D000881 ORTHO05D000666 3.2e-09 65.9 128 36.7
CSS0021436 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 4.1e-09 65.5 104 38.5
Lsat_1_v5_gn_1_56241 Lactuca sativa HOM05D000881 ORTHO05D000666 4.1e-09 65.5 115 37.4
QL11p032427 Quercus lobata HOM05D000881 ORTHO05D000666 4.1e-09 65.5 133 38.3
Cc06_g07270 Coffea canephora HOM05D000881 ORTHO05D000666 5.4e-09 65.1 115 35.7
Gohir.D11G244000 Gossypium hirsutum HOM05D000881 ORTHO05D000666 7.0e-09 64.7 94 39.4
Gorai.007G259500 Gossypium raimondii HOM05D000881 ORTHO05D000666 7.0e-09 64.7 94 39.4
HanXRQChr11g0347921 Helianthus annuus HOM05D000881 ORTHO05D000666 7.0e-09 64.7 92 42.4
Lj2g0006631 Lotus japonicus HOM05D000881 ORTHO05D000666 9.2e-09 64.3 139 35.3
CsaV3_1G005060 Cucumis sativus L. HOM05D000881 ORTHO05D000666 1.2e-08 63.9 102 41.2
Duzib106G1449 Durio zibethinus HOM05D000881 ORTHO05D000666 1.2e-08 63.9 100 39.0
MD06G1239100 Malus domestica HOM05D000881 ORTHO05D000666 1.2e-08 63.9 91 45.1
Psat1g121560 Pisum sativum HOM05D000881 ORTHO05D000666 1.2e-08 63.9 112 40.2
Gorai.004G251300 Gossypium raimondii HOM05D000881 ORTHO05D000666 1.6e-08 63.5 108 37.0
HanXRQChr01g0026391 Helianthus annuus HOM05D000881 ORTHO05D000666 1.6e-08 63.5 89 40.4
Rhsim03G0053800 Rhododendron simsii HOM05D000881 ORTHO05D000666 2.0e-08 63.2 91 44.0
TPR.G19878 Trifolium pratense HOM05D000881 ORTHO05D000666 2.7e-08 62.8 104 43.3
VMungo0331G1612 Vigna mungo HOM05D008573 ORTHO05D009911 2.7e-08 62.8 144 33.3
CSS0033822 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 4.6e-08 62.0 106 38.7
CDE05G3520 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 4.6e-08 62.0 105 38.1
Glyma.09G165300 Glycine max HOM05D000881 ORTHO05D000666 4.6e-08 62.0 92 43.5
Sabra13G0049400 Salix brachista HOM05D000881 ORTHO05D000666 4.6e-08 62.0 97 39.2
Cpa.g.sc161.5 Carica papaya HOM05D000881 ORTHO05D000666 5.9e-08 61.6 96 42.7
Cfa017687 Carpinus fangiana HOM05D000881 ORTHO05D000666 5.9e-08 61.6 104 38.5
HanXRQChr16g0516881 Helianthus annuus HOM05D000881 ORTHO05D000666 7.8e-08 61.2 89 40.4
Medtr6g478190 Medicago truncatula HOM05D000881 ORTHO05D000666 1.0e-07 60.8 89 43.8
Lj1g0015574 Lotus japonicus HOM05D000881 ORTHO05D000666 1.3e-07 60.5 90 41.1
Nitab4.5_0002131g0030 Nicotiana tabacum HOM05D000881 ORTHO05D000666 1.3e-07 60.5 111 38.7
Phvul.004G140900 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.3e-07 60.5 99 40.4
MD12G1007500 Malus domestica HOM05D000881 ORTHO05D000666 1.7e-07 60.1 112 36.6
Lsat_1_v5_gn_4_63061 Lactuca sativa HOM05D000881 ORTHO05D000666 2.3e-07 59.7 110 34.5
Medtr7g086130 Medicago truncatula HOM05D000881 ORTHO05D000666 2.3e-07 59.7 94 39.4
Psat3g087960 Pisum sativum HOM05D000881 ORTHO05D000666 2.3e-07 59.7 102 39.2
Duzib177G0879 Durio zibethinus HOM05D000881 ORTHO05D000666 3.0e-07 59.3 115 39.1
CSS0037632 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 3.9e-07 58.9 92 37.0
MBI05_g04123_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 3.9e-07 58.9 101 36.6
PGR142G0911 Punica granatum HOM05D000881 ORTHO05D000666 3.9e-07 58.9 108 31.5
GSVIVG01022437001 Vitis vinifera HOM05D000881 ORTHO05D000666 3.9e-07 58.9 94 37.2
Prupe.5G242900 Prunus persica HOM05D000881 ORTHO05D000666 5.0e-07 58.5 95 43.2
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 6.6e-07 58.2 93 36.6
Dinv32138 Davidia involucrata HOM05D000881 ORTHO05D000666 8.6e-07 57.8 111 36.9
Duzib128G1479 Durio zibethinus HOM05D000881 ORTHO05D000666 8.6e-07 57.8 142 32.4
Lalb_Chr14g0370271 Lupinus albus HOM05D000881 ORTHO05D000666 8.6e-07 57.8 96 41.7
Prupe.7G008300 Prunus persica HOM05D000881 ORTHO05D000666 2.5e-06 56.2 165 29.7
Gorai.004G251000 Gossypium raimondii HOM05D000881 ORTHO05D000666 3.3e-06 55.8 90 36.7
CiPaw.13G128700 Carya illinoinensis HOM05D000881 ORTHO05D000666 4.3e-06 55.5 104 40.4
Phvul.001G113500 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 4.3e-06 55.5 103 35.0
arahy.Tifrunner.gnm1.ann1.JC7BND Arachis hypogaea HOM05D000881 ORTHO05D000666 5.6e-06 55.1 117 35.0
HanXRQChr15g0470771 Helianthus annuus HOM05D000881 ORTHO05D000666 5.6e-06 55.1 100 36.0
AUR62036272 Chenopodium quinoa HOM05D000881 ORTHO05D000666 9.5e-06 54.3 112 35.7


User provided reference genes

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