Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 1.7e-38 162.2 79 100.0
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 5.2e-32 140.6 83 85.5
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 6.0e-28 127.1 83 78.3
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.1e-24 116.3 81 74.1
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-24 115.9 83 74.7
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 3.2e-21 104.8 82 67.1
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 4.2e-21 104.4 83 65.1
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.4e-21 104.0 91 60.4
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.7e-20 101.7 95 58.9
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 6.6e-19 97.1 85 57.6
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.3e-18 94.4 68 67.6
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 9.6e-18 93.2 64 70.3
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 1.6e-17 92.4 68 67.6
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 8.1e-17 90.1 64 67.2
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.1e-17 90.1 64 67.2
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.1e-16 89.7 77 59.7
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.1e-16 88.2 61 67.2
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 5.3e-16 87.4 80 63.8
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 5.3e-16 87.4 93 52.7
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 5.3e-16 87.4 86 57.0
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 1.2e-15 86.3 59 67.8
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.2e-15 86.3 61 67.2
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.5e-15 85.9 63 60.3
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 2.6e-15 85.1 79 60.8
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 4.5e-15 84.3 93 50.5
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.7e-14 82.4 62 62.9
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 2.2e-14 82.0 76 57.9
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.8e-14 81.3 61 65.6
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 3.8e-14 81.3 69 55.1
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 4.9e-14 80.9 79 58.2
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.1e-13 79.7 58 62.1
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.4e-13 79.3 93 48.4
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 1.9e-13 79.0 48 77.1
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.2e-13 77.8 63 60.3
SHI14661 Sapria himalayana HOM05D004137 ORTHO05D004804 7.1e-13 77.0 56 62.5
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 9.3e-13 76.6 58 62.1
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 3.5e-12 74.7 58 60.3
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 6.0e-12 73.9 78 47.4
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 7.9e-12 73.6 58 62.1
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 1.0e-11 73.2 65 55.4
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 1.0e-11 73.2 65 55.4
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 1.0e-11 73.2 65 55.4
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 1.0e-11 73.2 65 55.4
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.0e-11 73.2 61 60.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.0e-11 73.2 61 60.7
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.0e-11 73.2 61 60.7
Lj1g0005734 Lotus japonicus HOM05D004137 ORTHO05D004804 1.0e-11 73.2 68 57.4
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 1.0e-11 73.2 63 61.9
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.3e-11 72.8 61 60.7
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 1.8e-11 72.4 65 55.4
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 1.8e-11 72.4 65 55.4
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.8e-11 72.4 63 50.8
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.8e-11 72.4 63 50.8
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 1.8e-11 72.4 58 58.6
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.3e-11 72.0 63 49.2
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.3e-11 72.0 63 49.2
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.3e-11 72.0 69 52.2
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 3.0e-11 71.6 52 69.2
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.0e-11 71.6 73 50.7
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 5.1e-11 70.9 59 61.0
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.1e-11 70.9 61 59.0
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 6.7e-11 70.5 50 66.0
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.7e-11 70.1 75 52.0
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.1e-10 69.7 62 51.6
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.5e-10 69.3 62 50.0
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.5e-10 68.6 63 50.8
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 2.5e-10 68.6 63 50.8
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 3.3e-10 68.2 63 46.0
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 4.3e-10 67.8 84 45.2
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.3e-10 67.8 63 46.0
VMungo1383G3601 Vigna mungo HOM05D001721 ORTHO05D001804 4.3e-10 67.8 59 62.7
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 5.6e-10 67.4 63 46.0
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 5.6e-10 67.4 62 51.6
Glyma.19G112300 Glycine max HOM05D004137 ORTHO05D004804 7.4e-10 67.0 59 62.7
Phvul.001G111100 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 7.4e-10 67.0 59 61.0
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 9.6e-10 66.6 78 47.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.1e-09 65.5 73 45.2
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 2.8e-09 65.1 63 46.0
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 4.8e-09 64.3 58 56.9
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 4.8e-09 64.3 78 43.6
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 6.2e-09 63.9 85 40.0
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 8.1e-09 63.5 64 50.0
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 8.1e-09 63.5 63 44.4
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 8.1e-09 63.5 64 50.0
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.8e-08 62.4 63 49.2
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 5.3e-08 60.8 62 48.4
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 9.0e-08 60.1 77 42.9
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 9.0e-08 60.1 63 50.8
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 9.0e-08 60.1 80 40.0
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.2e-07 59.7 60 55.0
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.2e-07 59.7 73 43.8
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.2e-07 59.7 64 46.9
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 1.5e-07 59.3 65 44.6
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 3.4e-07 58.2 64 40.6
Peaxi162Scf00003g04814 Petunia axillaris HOM05D004137 ORTHO05D004804 4.5e-07 57.8 70 48.6
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 1.3e-06 56.2 58 48.3
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.7e-06 55.8 65 36.9
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 2.2e-06 55.5 63 44.4
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.9e-06 55.1 63 42.9
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.9e-06 55.1 63 46.0
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.4e-06 53.9 63 42.9


User provided reference genes

Program Settings