Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G142350 Manihot esculenta HOM05D003193 ORTHO05D023334 8.2e-67 256.9 129 100.0
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 1.4e-34 149.8 98 78.6
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 1.3e-27 126.7 99 67.7
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 3.5e-25 118.6 99 63.6
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 7.8e-25 117.5 99 60.6
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 2.5e-23 112.5 98 57.1
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 5.6e-23 111.3 99 59.6
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 1.2e-22 110.2 99 60.6
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 2.1e-22 109.4 98 55.1
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 2.1e-22 109.4 98 54.1
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 2.8e-22 109.0 98 53.1
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 2.8e-22 109.0 98 56.1
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 4.7e-22 108.2 98 55.1
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 8.0e-22 107.5 98 55.1
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 1.4e-21 106.7 99 53.5
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 2.3e-21 105.9 95 54.7
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 2.3e-21 105.9 98 54.1
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 2.3e-21 105.9 98 52.0
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.3e-21 105.9 96 57.3
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 3.0e-21 105.5 99 53.5
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 4.0e-21 105.1 98 53.1
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 4.0e-21 105.1 97 56.7
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 5.2e-21 104.8 98 52.0
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 5.2e-21 104.8 99 51.5
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 1.5e-20 103.2 95 55.8
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 2.0e-20 102.8 99 53.5
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 2.0e-20 102.8 99 53.5
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 2.6e-20 102.4 95 52.6
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 2.6e-20 102.4 93 59.1
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 2.6e-20 102.4 98 52.0
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.6e-20 102.4 99 52.5
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 3.4e-20 102.1 98 49.0
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 4.4e-20 101.7 95 55.8
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 5.7e-20 101.3 99 52.5
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 7.5e-20 100.9 100 53.0
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 7.5e-20 100.9 98 51.0
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 9.8e-20 100.5 99 55.6
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 9.8e-20 100.5 99 55.6
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 9.8e-20 100.5 95 52.6
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 1.3e-19 100.1 99 54.5
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 1.3e-19 100.1 95 55.8
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.3e-19 100.1 95 54.7
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 2.2e-19 99.4 95 53.7
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 2.2e-19 99.4 99 52.5
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 2.2e-19 99.4 94 55.3
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.2e-19 99.4 96 53.1
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 2.9e-19 99.0 95 52.6
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 2.9e-19 99.0 99 52.5
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 3.7e-19 98.6 95 52.6
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 3.7e-19 98.6 98 53.1
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 4.9e-19 98.2 99 52.5
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 6.4e-19 97.8 95 51.6
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 6.4e-19 97.8 95 51.6
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 8.3e-19 97.4 97 52.6
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 8.3e-19 97.4 97 52.6
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 8.3e-19 97.4 99 50.5
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 1.4e-18 96.7 100 46.0
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 1.8e-18 96.3 95 50.5
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 1.8e-18 96.3 99 51.5
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.8e-18 96.3 97 52.6
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 1.8e-18 96.3 93 55.9
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 2.4e-18 95.9 93 51.6
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 3.2e-18 95.5 95 51.6
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 5.4e-18 94.7 97 53.6
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 7.0e-18 94.4 99 51.5
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 7.0e-18 94.4 95 50.5
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 1.6e-17 93.2 98 52.0
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 2.0e-17 92.8 95 50.5
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.0e-17 92.8 95 50.5
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.0e-17 92.8 95 50.5
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.0e-17 92.8 95 50.5
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.0e-17 92.8 93 50.5
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 3.5e-17 92.0 95 49.5
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 3.5e-17 92.0 95 53.7
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 4.6e-17 91.7 100 46.0
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 5.9e-17 91.3 95 48.4
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 5.9e-17 91.3 90 55.6
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 7.8e-17 90.9 95 47.4
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 7.8e-17 90.9 95 49.5
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 1.0e-16 90.5 99 50.5
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 1.0e-16 90.5 116 42.2
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.0e-16 90.5 95 49.5
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.3e-16 90.1 96 44.8
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.3e-16 90.1 98 43.9
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.7e-16 89.7 95 48.4
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.3e-16 89.4 99 47.5
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 3.0e-16 89.0 89 53.9
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 3.9e-16 88.6 92 51.1
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 3.9e-16 88.6 100 45.0
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 8.6e-16 87.4 93 46.2
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 8.6e-16 87.4 92 50.0
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.1e-15 87.0 93 48.4
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 1.9e-15 86.3 92 51.1
Actinidia26096 Actinidia chinensis HOM05D003193 ORTHO05D023334 2.5e-15 85.9 89 50.6
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 2.5e-15 85.9 92 50.0
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 2.5e-15 85.9 97 44.3
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 3.3e-15 85.5 93 41.9
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 6.8e-13 77.8 94 40.4
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 6.8e-13 77.8 94 38.3
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 1.2e-12 77.0 95 44.2
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 1.5e-12 76.6 92 42.4
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 1.3e-11 73.6 90 38.9
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 3.2e-10 68.9 97 38.1
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 3.2e-10 68.9 88 37.5
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 9.5e-07 57.4 90 28.9


User provided reference genes

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