Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 1.3e-61 239.6 127 100.0
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 4.3e-60 234.6 127 96.9
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 4.0e-58 228.0 127 94.5
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 4.0e-58 228.0 127 94.5
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 5.8e-57 224.2 128 93.8
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 7.6e-57 223.8 127 92.9
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 9.9e-57 223.4 127 92.9
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.3e-56 223.0 127 91.3
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 1.3e-56 223.0 126 91.3
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 2.9e-56 221.9 128 92.2
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 3.8e-56 221.5 127 91.3
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 6.4e-56 220.7 127 91.3
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 8.4e-56 220.3 127 90.6
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 91.3
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 90.6
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 1.4e-55 219.5 127 89.8
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.4e-55 219.5 126 90.5
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 2.4e-55 218.8 127 89.0
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.2e-55 218.4 127 89.8
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 3.2e-55 218.4 128 91.4
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 4.1e-55 218.0 124 91.9
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.1e-55 218.0 128 91.4
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 4.1e-55 218.0 127 90.6
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 5.4e-55 217.6 127 89.0
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 5.4e-55 217.6 127 89.8
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 7.1e-55 217.2 127 88.2
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 89.0
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 89.8
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 2.1e-54 215.7 127 89.8
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 2.1e-54 215.7 127 89.8
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 89.0
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 3.5e-54 214.9 123 90.2
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 88.2
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 4.6e-54 214.5 127 87.4
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 4.6e-54 214.5 127 87.4
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 6.0e-54 214.2 128 89.1
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 6.0e-54 214.2 127 86.6
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 6.0e-54 214.2 127 88.2
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 7.8e-54 213.8 127 87.4
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.0e-53 213.4 127 87.4
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 1.0e-53 213.4 129 89.1
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-53 213.4 127 87.4
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 1.0e-53 213.4 125 88.0
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 87.4
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 86.6
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 86.6
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 86.6
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 2.3e-53 212.2 127 86.6
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 2.3e-53 212.2 127 86.6
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 3.9e-53 211.5 123 89.4
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 87.4
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 86.6
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 6.6e-53 210.7 128 89.1
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 8.7e-53 210.3 127 86.6
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 2.5e-52 208.8 125 87.2
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 4.3e-52 208.0 126 84.9
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 5.6e-52 207.6 126 83.3
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 9.6e-52 206.8 129 85.3
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 84.3
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 1.2e-51 206.5 129 84.5
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 1.2e-51 206.5 129 85.3
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.6e-51 206.1 129 86.0
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 1.6e-51 206.1 126 84.1
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 2.1e-51 205.7 129 84.5
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.8e-51 205.3 127 85.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 84.3
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 3.6e-51 204.9 129 85.3
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 4.7e-51 204.5 126 84.1
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.1e-50 203.4 124 85.5
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.1e-50 203.4 127 83.5
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.4e-50 203.0 127 81.9
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 1.4e-50 203.0 126 84.1
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 1.8e-50 202.6 129 83.7
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.8e-50 202.6 127 81.1
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 82.5
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 83.5
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 81.9
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 2.0e-49 199.1 124 82.3
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 3.4e-49 198.4 124 81.5
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 5.8e-49 197.6 127 81.1
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 7.6e-49 197.2 122 85.2
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 1.3e-48 196.4 122 83.6
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 3.8e-48 194.9 126 80.2
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 1.9e-47 192.6 127 76.4
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.6e-46 189.5 127 78.0
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.0e-45 186.8 127 75.6
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.3e-45 186.4 130 76.9
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 1.7e-45 186.0 125 77.6
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.7e-45 186.0 126 76.2
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 2.3e-45 185.7 131 76.3
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 5.1e-45 184.5 130 76.2
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 6.6e-45 184.1 125 76.0
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.5e-44 183.0 131 73.3
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.5e-44 183.0 131 75.6
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.9e-44 182.6 130 76.2
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 1.9e-44 182.6 131 73.3
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.9e-44 182.6 122 76.2
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 1.9e-44 182.6 131 73.3
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.5e-44 182.2 122 76.2
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 4.3e-44 181.4 118 80.5
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.3e-43 179.9 127 72.4
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 1.6e-43 179.5 118 78.0
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 2.1e-43 179.1 130 74.6
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 2.8e-43 178.7 118 78.0
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.1e-42 176.8 127 74.0
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 1.8e-42 176.0 127 75.6
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.2e-41 173.3 129 75.2
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 5.8e-41 171.0 127 71.7
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 7.6e-41 170.6 127 71.7
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 1.3e-40 169.9 129 74.4
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 1.3e-40 169.9 129 74.4
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 8.4e-40 167.2 147 62.6
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 8.4e-40 167.2 127 69.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.2e-38 163.3 154 63.0
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 2.1e-38 162.5 127 67.7
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 1.9e-36 156.0 127 66.1
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 4.8e-35 151.4 127 63.8
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.4e-34 149.8 127 62.2
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 9.0e-34 147.1 88 88.6
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 4.9e-32 141.4 90 80.0
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 3.2e-31 138.7 87 85.1
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.6e-30 136.3 127 57.5
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 3.0e-29 132.1 87 80.5
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 3.9e-29 131.7 133 56.4
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 6.2e-27 124.4 87 72.4
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 9.3e-23 110.5 120 48.3
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 4.5e-17 91.7 61 78.7
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 1.3e-16 90.1 121 43.0
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.7e-16 89.7 121 41.3
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 8.8e-13 77.4 40 90.0
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 7.4e-12 74.3 46 84.8
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 2.2e-11 72.8 55 69.1
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 2.2e-08 62.8 50 68.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.9e-08 62.4 31 90.3
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 2.5e-07 59.3 41 68.3
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 3.6e-06 55.5 119 32.8


User provided reference genes

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