Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G133801 Manihot esculenta HOM05D008555 ORTHO05D010760 0.0e+00 1180.6 618 100.0
Cfa017405 Carpinus fangiana HOM05D008555 ORTHO05D010760 1.1e-76 292.0 570 38.9
QL07p031190 Quercus lobata HOM05D008555 ORTHO05D010760 5.7e-73 279.6 488 41.4
Haze_20761 Corylus avellana HOM05D008555 ORTHO05D010760 1.1e-71 275.4 711 33.9
QL07p047905 Quercus lobata HOM05D008555 ORTHO05D010760 1.4e-71 275.0 488 41.0
GSVIVG01034198001 Vitis vinifera HOM05D008555 ORTHO05D010760 1.3e-66 258.5 568 36.6
Thecc.05G042000 Theobroma cacao HOM05D008555 ORTHO05D010760 5.1e-66 256.5 533 37.7
Dinv37190 Davidia involucrata HOM05D008555 ORTHO05D010760 7.7e-62 242.7 593 34.6
Duzib093G2048 Durio zibethinus HOM05D008555 ORTHO05D010760 2.5e-60 237.7 563 36.6
Prupe.6G252400 Prunus persica HOM05D008555 ORTHO05D010760 3.2e-60 237.3 605 35.7
MD04G1125500 Malus domestica HOM05D008555 ORTHO05D010760 7.9e-59 232.6 574 35.7
TAR623G0003 Trochodendron aralioides HOM05D008555 ORTHO05D010760 2.4e-55 221.1 615 33.5
Gohir.A09G157300 Gossypium hirsutum HOM05D008555 ORTHO05D010760 6.9e-55 219.5 519 34.9
FAN09G2752 Fragaria x ananassa HOM05D008555 ORTHO05D010760 2.0e-54 218.0 565 35.6
FvH4_6g14100 Fragaria vesca HOM05D008555 ORTHO05D010760 1.0e-53 215.7 576 34.9
Nn2g12801 Nelumbo nucifera HOM05D008555 ORTHO05D010760 8.5e-53 212.6 484 37.4
FAN05G3093 Fragaria x ananassa HOM05D008555 ORTHO05D010760 1.1e-52 212.2 576 34.4
Gohir.D09G152600 Gossypium hirsutum HOM05D008555 ORTHO05D010760 5.7e-49 199.9 563 32.1
CSS0010375 Camellia sinensis var. sinensis HOM05D008555 ORTHO05D010760 2.2e-48 198.0 561 32.3
Sc20g0004840 Simmondsia chinensis HOM05D008555 ORTHO05D010760 1.5e-46 191.8 314 40.8
Rhsim05G0190300 Rhododendron simsii HOM05D008555 ORTHO05D010760 2.6e-46 191.0 619 31.8
Aqoxy4G02966 Aquilegia oxysepala HOM05D008555 ORTHO05D010760 7.7e-46 189.5 585 31.3
MBI05_g06539_MAGBIO Magnolia biondii HOM05D008555 ORTHO05D010760 4.2e-44 183.7 444 34.9
Hund09315 Selenicereus undatus HOM05D008555 ORTHO05D010760 5.7e-41 173.3 299 39.8
Migut.J00343 Erythranthe guttata HOM05D008555 ORTHO05D010760 5.3e-39 166.8 494 31.4
RcHm_v2.0_Chr3g0467001 Rosa chinensis HOM05D008555 ORTHO05D010760 2.0e-38 164.9 543 32.0
FAN02G2195 Fragaria x ananassa HOM05D008555 ORTHO05D010760 3.5e-38 164.1 581 31.3
Eucgr.A01250 Eucalyptus grandis HOM05D008555 ORTHO05D010760 1.7e-37 161.8 541 32.3
Cc06_g02800 Coffea canephora HOM05D008555 ORTHO05D010760 6.5e-37 159.8 191 46.1
SalBow3G1082 Salvia bowleyana HOM05D008555 ORTHO05D010760 1.9e-36 158.3 582 29.0
HanXRQChr04g0124781 Helianthus annuus HOM05D008555 ORTHO05D010760 4.2e-36 157.1 195 44.6
SGA_v2.0_scaffold126G33802 Striga asiatica HOM05D008555 ORTHO05D010760 4.4e-33 147.1 593 28.5
AUR62019574 Chenopodium quinoa HOM05D008555 ORTHO05D010760 5.7e-33 146.7 585 30.1
AUR62042775 Chenopodium quinoa HOM05D008555 ORTHO05D010760 1.6e-30 138.7 597 28.6
PSO384G5088 Papaver somniferum HOM05D008555 ORTHO05D010760 1.6e-30 138.7 570 28.9
Lsat_1_v5_gn_8_82700 Lactuca sativa HOM05D008555 ORTHO05D010760 1.7e-29 135.2 490 28.4
ECA236G1276 Erigeron canadensis HOM05D008555 ORTHO05D010760 1.1e-28 132.5 448 28.6
PSO339G2550 Papaver somniferum HOM05D008555 ORTHO05D010760 1.1e-28 132.5 570 28.6
vmacro20136 Vaccinium macrocarpon HOM05D008555 ORTHO05D010760 1.6e-27 128.6 596 28.9
HPP92_014313 Vanilla planifolia HOM05D008555 ORTHO05D010760 2.7e-27 127.9 437 29.5
EL10Ac1g01982 Beta vulgaris HOM05D008555 ORTHO05D010760 1.4e-26 125.6 543 29.7
COL.COLO4_14830 Corchorus olitorius HOM05D008555 ORTHO05D010760 6.3e-24 116.7 572 26.2
Lsat_1_v5_gn_3_51821 Lactuca sativa HOM05D008555 ORTHO05D010760 2.9e-21 107.8 161 37.9
Gorai.006G174100 Gossypium raimondii HOM05D008555 ORTHO05D010760 4.2e-20 104.0 427 28.3
LjContig00155g0013817 Lotus japonicus HOM05D001613 ORTHO05D001556 2.8e-11 74.7 124 35.5
Lj3g0027617 Lotus japonicus HOM05D001613 ORTHO05D001556 3.6e-11 74.3 120 30.8
LjContig00155g0015542 Lotus japonicus HOM05D001613 ORTHO05D001556 1.4e-10 72.4 194 27.8
Lj3g0005400 Lotus japonicus HOM05D001613 ORTHO05D001556 3.1e-10 71.2 119 33.6
FAN27G0387 Fragaria x ananassa HOM05D001613 ORTHO05D001556 4.0e-10 70.9 130 30.8
RcHm_v2.0_Chr6g0306581 Rosa chinensis HOM05D001613 ORTHO05D001556 4.0e-10 70.9 130 30.0
FvH4_2g35340 Fragaria vesca HOM05D001613 ORTHO05D001556 5.2e-10 70.5 130 30.0
FAN15G0337 Fragaria x ananassa HOM05D001613 ORTHO05D001556 5.2e-10 70.5 130 30.0
FAN20G0144 Fragaria x ananassa HOM05D001613 ORTHO05D001556 1.2e-09 69.3 130 31.5
Ciclev10009238m.g Citrus clementina HOM05D001613 ORTHO05D001556 2.6e-09 68.2 124 32.3
Eucgr.C02981 Eucalyptus grandis HOM05D001613 ORTHO05D001556 3.4e-09 67.8 129 32.6
Lalb_Chr23g0269691 Lupinus albus HOM05D001613 ORTHO05D001556 4.4e-09 67.4 131 29.0
CiPaw.07G202400 Carya illinoinensis HOM05D001613 ORTHO05D001556 5.8e-09 67.0 129 30.2
Phvul.009G111400 Phaseolus vulgaris HOM05D001613 ORTHO05D001556 5.8e-09 67.0 126 27.8
Glyma.04G086200 Glycine max HOM05D001613 ORTHO05D001556 7.5e-09 66.6 129 28.7
TAR626G0213 Trochodendron aralioides HOM05D001613 ORTHO05D001556 7.5e-09 66.6 127 30.7
Rhsim07G0145900 Rhododendron simsii HOM05D001613 ORTHO05D001556 9.8e-09 66.2 124 30.6
Cfa013383 Carpinus fangiana HOM05D001613 ORTHO05D001556 1.3e-08 65.9 129 30.2
Prupe.1G445500 Prunus persica HOM05D001613 ORTHO05D001556 1.3e-08 65.9 129 28.7
Gohir.A05G045700 Gossypium hirsutum HOM05D001613 ORTHO05D001556 1.7e-08 65.5 129 29.5
Gorai.009G048700 Gossypium raimondii HOM05D001613 ORTHO05D001556 1.7e-08 65.5 129 29.5
Ca_23253_v3 Cicer arietinum L. HOM05D001613 ORTHO05D001556 2.2e-08 65.1 133 31.6
Aqoxy7G03880 Aquilegia oxysepala HOM05D001613 ORTHO05D001556 2.9e-08 64.7 129 28.7
Glyma.07G016000 Glycine max HOM05D001613 ORTHO05D001556 2.9e-08 64.7 131 29.8
Lj6g0012782 Lotus japonicus HOM05D001613 ORTHO05D001556 2.9e-08 64.7 130 29.2
Medtr3g110260 Medicago truncatula HOM05D001613 ORTHO05D001556 2.9e-08 64.7 129 27.9
TAR624G0413 Trochodendron aralioides HOM05D001613 ORTHO05D001556 2.9e-08 64.7 129 29.5
MELO3C003471.2 Cucumis melo HOM05D001613 ORTHO05D001556 3.7e-08 64.3 129 27.9
Duzib168G1566 Durio zibethinus HOM05D001613 ORTHO05D001556 3.7e-08 64.3 129 28.7
PGR044G2336 Punica granatum HOM05D001613 ORTHO05D001556 4.9e-08 63.9 125 27.2
EL10Ac2g03988 Beta vulgaris HOM05D001613 ORTHO05D001556 6.4e-08 63.5 127 30.7
FAN24G3313 Fragaria x ananassa HOM05D001613 ORTHO05D001556 6.4e-08 63.5 92 33.7
Hund03385 Selenicereus undatus HOM05D001613 ORTHO05D001556 6.4e-08 63.5 129 28.7
unitig_0.g2570 Utricularia gibba HOM05D001613 ORTHO05D001556 6.4e-08 63.5 132 28.8
Ca_15578_v3 Cicer arietinum L. HOM05D001613 ORTHO05D001556 8.3e-08 63.2 129 27.1
Nn8g39093 Nelumbo nucifera HOM05D001613 ORTHO05D001556 8.3e-08 63.2 129 28.7
arahy.Tifrunner.gnm1.ann1.ARI2AB Arachis hypogaea HOM05D001613 ORTHO05D001556 1.1e-07 62.8 127 28.3
CSS0023026 Camellia sinensis var. sinensis HOM05D001613 ORTHO05D001556 1.1e-07 62.8 129 27.9
Dinv27919 Davidia involucrata HOM05D001613 ORTHO05D001556 1.1e-07 62.8 127 29.9
PSO210G0763 Papaver somniferum HOM05D001613 ORTHO05D001556 1.1e-07 62.8 129 27.1
PSO210G3138 Papaver somniferum HOM05D001613 ORTHO05D001556 1.1e-07 62.8 129 27.1
CDE05G2145 Ceratophyllum demersum HOM05D001613 ORTHO05D001556 1.4e-07 62.4 128 29.7
Glyma.06G087700 Glycine max HOM05D001613 ORTHO05D001556 1.4e-07 62.4 129 27.1
GSVIVG01035290001 Vitis vinifera HOM05D001613 ORTHO05D001556 1.4e-07 62.4 127 29.9
Actinidia30285 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.9e-07 62.0 129 29.5
arahy.Tifrunner.gnm1.ann1.440ZV2 Arachis hypogaea HOM05D001613 ORTHO05D001556 1.9e-07 62.0 127 27.6
Glyma.08G201500 Glycine max HOM05D001613 ORTHO05D001556 1.9e-07 62.0 126 28.6
Manes.16G074000 Manihot esculenta HOM05D001613 ORTHO05D001556 1.9e-07 62.0 126 30.2
Thecc.09G047300 Theobroma cacao HOM05D001613 ORTHO05D001556 1.9e-07 62.0 129 27.9
Actinidia14684 Actinidia chinensis HOM05D001613 ORTHO05D001556 3.2e-07 61.2 126 27.8
ClCG11G015080 Citrullus lanatus HOM05D001613 ORTHO05D001556 3.2e-07 61.2 143 28.0
Oeu061323.1 Olea europaea HOM05D001613 ORTHO05D001556 3.2e-07 61.2 125 28.8
Psat5g020320 Pisum sativum HOM05D001613 ORTHO05D001556 3.2e-07 61.2 129 27.1
TWI34G0975 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 3.2e-07 61.2 127 30.7
Gohir.D06G091400 Gossypium hirsutum HOM05D001613 ORTHO05D001556 4.1e-07 60.8 129 27.1
VMungo1309G2316 Vigna mungo HOM05D008141 ORTHO05D008631 4.1e-07 60.8 148 26.4
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 5.4e-07 60.5 319 23.2
Gorai.010G105400 Gossypium raimondii HOM05D001613 ORTHO05D001556 5.4e-07 60.5 161 26.7
Gorai.013G219600 Gossypium raimondii HOM05D001613 ORTHO05D001556 5.4e-07 60.5 129 29.5
Os09g0346900 Oryza sativa ssp. japonica HOM05D001613 ORTHO05D001556 5.4e-07 60.5 125 27.2
Phvul.010G145800 Phaseolus vulgaris HOM05D001613 ORTHO05D001556 5.4e-07 60.5 156 26.9
Potri.018G046200 Populus trichocarpa HOM05D001613 ORTHO05D001556 5.4e-07 60.5 129 26.4
Gohir.A06G091900 Gossypium hirsutum HOM05D001613 ORTHO05D001556 7.0e-07 60.1 129 27.9
MD15G1091100 Malus domestica HOM05D001613 ORTHO05D001556 7.0e-07 60.1 90 33.3
Atru.chr7.2061 Acer truncatum HOM05D001613 ORTHO05D001556 9.2e-07 59.7 126 27.0
Cc08_g09850 Coffea canephora HOM05D001613 ORTHO05D001556 9.2e-07 59.7 129 27.1
Lalb_Chr25g0280141 Lupinus albus HOM05D001613 ORTHO05D001556 9.2e-07 59.7 129 29.5
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 9.2e-07 59.7 235 28.1
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 9.2e-07 59.7 224 29.5
TPR.G2460 Trifolium pratense HOM05D001613 ORTHO05D001556 9.2e-07 59.7 132 29.5
MD09G1204600 Malus domestica HOM05D001613 ORTHO05D001556 1.2e-06 59.3 130 28.5
Medtr8g014075 Medicago truncatula HOM05D001613 ORTHO05D001556 1.2e-06 59.3 132 29.5
Oeu015264.2 Olea europaea HOM05D001613 ORTHO05D001556 1.2e-06 59.3 127 29.1
MSTRG.11691 Avicennia marina HOM05D001613 ORTHO05D001556 1.6e-06 58.9 127 29.9
Migut.A00188 Erythranthe guttata HOM05D001613 ORTHO05D001556 1.6e-06 58.9 126 31.0
HanXRQChr13g0402181 Helianthus annuus HOM05D001613 ORTHO05D001556 1.6e-06 58.9 129 28.7
MD17G1184800 Malus domestica HOM05D001613 ORTHO05D001556 1.6e-06 58.9 128 30.5
QL05p020351 Quercus lobata HOM05D001613 ORTHO05D001556 1.6e-06 58.9 135 26.7
Sabra18G0045200 Salix brachista HOM05D001613 ORTHO05D001556 1.6e-06 58.9 135 28.1
CANSAT01G1609 Cannabis sativa HOM05D001613 ORTHO05D001556 2.0e-06 58.5 118 25.4
Dinv23386 Davidia involucrata HOM05D001613 ORTHO05D001556 2.0e-06 58.5 127 29.9
Oeu011282.1 Olea europaea HOM05D001613 ORTHO05D001556 2.0e-06 58.5 122 29.5
QL02p071875 Quercus lobata HOM05D001613 ORTHO05D001556 2.0e-06 58.5 122 28.7
Zm00001eb310530 Zea mays HOM05D001613 ORTHO05D001556 2.7e-06 58.2 128 27.3
CANSAT01G1940 Cannabis sativa HOM05D001613 ORTHO05D001556 3.5e-06 57.8 118 24.6
CiPaw.01G232100 Carya illinoinensis HOM05D001613 ORTHO05D001556 3.5e-06 57.8 129 26.4
AUR62009238 Chenopodium quinoa HOM05D001613 ORTHO05D001556 3.5e-06 57.8 143 29.4
ECA233G4162 Erigeron canadensis HOM05D001613 ORTHO05D001556 3.5e-06 57.8 92 31.5
Oeu024357.1 Olea europaea HOM05D008555 ORTHO05D010760 3.5e-06 57.8 346 24.9
AUR62041965 Chenopodium quinoa HOM05D001613 ORTHO05D001556 4.6e-06 57.4 143 29.4
CsaV3_7G035340 Cucumis sativus L. HOM05D001613 ORTHO05D001556 4.6e-06 57.4 82 32.9
Gohir.D13G193600 Gossypium hirsutum HOM05D001613 ORTHO05D001556 4.6e-06 57.4 124 30.6
Potri.001G189200 Populus trichocarpa HOM05D001613 ORTHO05D001556 4.6e-06 57.4 129 27.1
RhsimUnG0235600 Rhododendron simsii HOM05D001613 ORTHO05D001556 4.6e-06 57.4 122 30.3
vmacro09513 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 4.6e-06 57.4 250 23.6
ATR0705G197 Amborella trichopoda HOM05D001613 ORTHO05D001556 6.0e-06 57.0 126 27.8
MSTRG.14027 Avicennia marina HOM05D001613 ORTHO05D001556 6.0e-06 57.0 124 29.0
ClCG09G000140 Citrullus lanatus HOM05D001613 ORTHO05D001556 6.0e-06 57.0 87 32.2
Lsat_1_v5_gn_6_22781 Lactuca sativa HOM05D001613 ORTHO05D001556 6.0e-06 57.0 127 26.0
QL12p041074 Quercus lobata HOM05D001613 ORTHO05D001556 6.0e-06 57.0 122 28.7
Sed0017488 Sechium edule HOM05D001613 ORTHO05D001556 6.0e-06 57.0 92 31.5
SGA_v2.0_scaffold88G27191 Striga asiatica HOM05D001613 ORTHO05D001556 6.0e-06 57.0 84 32.1
Cc04_g02640 Coffea canephora HOM05D001613 ORTHO05D001556 7.8e-06 56.6 82 32.9
Dinv30443 Davidia involucrata HOM05D001613 ORTHO05D001556 7.8e-06 56.6 126 27.8
Eucgr.F01181 Eucalyptus grandis HOM05D001613 ORTHO05D001556 7.8e-06 56.6 205 22.4
Psat4g221120 Pisum sativum HOM05D001613 ORTHO05D001556 7.8e-06 56.6 124 29.8
Rhsim12G0202800 Rhododendron simsii HOM05D001613 ORTHO05D001556 7.8e-06 56.6 135 26.7
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 7.8e-06 56.6 139 28.1
unitig_21.g20063 Utricularia gibba HOM05D001613 ORTHO05D001556 7.8e-06 56.6 143 30.8
unitig_46.g18563 Utricularia gibba HOM05D001613 ORTHO05D001556 7.8e-06 56.6 69 31.9


User provided reference genes

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