Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 0.0e+00 1462.6 729 100.0
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 0.0e+00 1090.9 761 72.5
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 0.0e+00 1089.7 756 72.1
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 9.9e-303 1043.1 730 71.9
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.2e-302 1042.0 732 69.9
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 7.1e-301 1036.9 732 71.6
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 3.0e-299 1031.6 722 70.8
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.6e-297 1025.8 733 69.8
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 2.6e-295 1018.5 715 71.5
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.4e-295 1018.1 730 69.2
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 4.9e-294 1014.2 732 69.3
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.4e-293 1012.7 734 68.7
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 1.9e-293 1012.3 734 68.3
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 4.2e-293 1011.1 733 68.5
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 9.3e-293 1010.0 730 69.2
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.2e-292 1009.6 734 67.8
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.7e-292 1008.4 730 69.0
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.7e-292 1008.4 730 69.0
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.3e-291 1006.1 734 68.3
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 2.3e-291 1005.4 730 69.9
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.1e-290 1003.0 730 68.8
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 9.7e-290 1000.0 735 68.2
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.7e-286 989.2 731 66.2
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.7e-286 989.2 730 67.9
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.9e-286 988.4 727 67.3
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 3.8e-286 988.0 732 66.5
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 2.1e-284 982.2 731 65.9
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 3.6e-284 981.5 731 65.9
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.8e-283 979.2 731 66.6
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 6.7e-283 977.2 731 66.1
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.5e-282 976.1 729 66.3
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 4.3e-282 974.5 731 67.6
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 5.7e-282 974.2 728 66.2
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.3e-281 973.0 730 66.0
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 3.7e-281 971.5 731 66.1
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.4e-280 969.5 733 65.3
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.4e-280 968.8 732 65.7
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 9.1e-280 966.8 730 65.9
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.5e-279 966.1 733 65.2
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 2.0e-279 965.7 728 65.9
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 4.5e-279 964.5 731 65.5
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 5.9e-279 964.1 727 65.5
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.0e-278 963.4 732 65.7
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 2.9e-278 961.8 731 65.1
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 3.8e-278 961.4 733 65.5
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 5.0e-278 961.1 731 65.1
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 1.1e-277 959.9 730 65.5
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.5e-277 958.7 725 65.4
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 7.2e-277 957.2 732 64.5
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 4.7e-276 954.5 727 65.3
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 6.1e-276 954.1 746 63.8
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.8e-275 952.6 794 61.6
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 6.7e-275 950.7 725 65.5
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 8.8e-275 950.3 735 64.9
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 2.0e-274 949.1 733 64.3
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.4e-274 948.0 735 64.8
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 9.7e-274 946.8 735 64.6
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 2.4e-272 942.2 737 64.9
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.4e-272 942.2 730 64.1
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.2e-271 939.9 730 64.5
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 2.6e-271 938.7 732 63.7
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.0e-270 936.8 727 64.1
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 6.5e-270 934.1 731 64.2
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 4.2e-269 931.4 733 63.2
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 7.4e-266 920.6 732 63.3
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 7.4e-266 920.6 672 68.0
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 3.2e-261 905.2 703 64.7
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.6e-260 902.9 733 61.9
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.4e-256 889.8 701 62.8
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 2.7e-255 885.6 658 66.6
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 3.0e-251 872.1 703 61.7
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.8e-242 840.5 756 57.7
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 4.9e-241 838.2 728 58.5
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.7e-239 832.4 733 58.3
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.0e-238 830.5 727 60.0
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 3.3e-237 825.5 669 63.1
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.3e-233 813.5 709 58.4
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 2.0e-231 806.2 737 57.5
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 2.7e-231 805.8 607 63.6
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.0e-230 803.9 624 66.5
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.0e-230 803.9 727 56.0
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 1.4e-227 793.5 607 63.4
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.0e-226 789.6 763 56.6
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.0e-226 789.6 605 63.1
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.2e-223 780.4 733 54.6
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 6.6e-222 774.6 830 54.1
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 3.2e-216 755.7 638 61.3
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 4.7e-212 741.9 621 60.5
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.5e-205 720.3 495 70.9
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 4.3e-205 718.8 635 57.2
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.8e-204 716.1 626 60.5
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.4e-203 713.8 733 53.1
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.1e-199 699.9 624 56.2
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 3.3e-197 692.6 490 68.8
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.9e-185 652.9 454 68.7
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.5e-184 648.7 453 69.5
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 6.9e-179 631.7 527 62.6
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 9.7e-165 584.7 738 45.4
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 6.3e-164 582.0 725 45.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 7.9e-159 565.1 422 68.0
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 3.3e-157 559.7 603 49.1
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.0e-138 497.3 583 45.3
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 1.2e-135 488.0 452 55.8
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.8e-127 460.3 626 45.7
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.2e-122 444.9 834 35.0
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.3e-121 441.4 382 58.6
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 2.6e-117 427.2 342 64.0
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.0e-113 415.2 543 42.0
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.8e-110 404.4 480 45.0
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.0e-105 387.1 289 65.4
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 9.2e-99 365.5 467 43.0
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.0e-90 336.3 225 69.8
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 8.1e-79 299.3 237 65.8
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 2.8e-63 247.7 656 31.9
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.9e-61 240.0 188 64.9
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.5e-59 234.6 125 77.6
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 6.7e-57 226.5 262 45.4
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.5e-56 225.3 324 41.7
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.0e-52 210.3 144 70.1
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.7e-49 199.9 203 56.7
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 2.0e-48 198.4 305 36.7
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.3e-47 193.4 126 73.8
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.2e-43 181.0 126 71.4
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.7e-34 151.4 100 70.0
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.0e-33 149.4 114 56.1
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.3e-30 137.1 169 48.5
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.7e-29 134.8 103 61.2
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.5e-24 119.0 131 48.9
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.2e-18 99.4 86 59.3
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 8.0e-18 96.7 114 47.4
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 5.2e-17 94.0 293 30.0
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 5.2e-17 94.0 66 59.1
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 5.7e-16 90.5 61 63.9
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 2.7e-13 81.6 93 49.5
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 4.7e-10 70.9 60 53.3
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 5.2e-09 67.4 43 69.8
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 5.2e-09 67.4 78 50.0
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 5.2e-09 67.4 102 40.2
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 2.6e-08 65.1 39 74.4
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 9.8e-08 63.2 44 63.6
A09p04910 Brassica napus HOM05D005479 ORTHO05D040437 9.2e-06 56.6 36 75.0
BraA09t36129Z Brassica rapa HOM05D005479 ORTHO05D040437 9.2e-06 56.6 36 75.0


User provided reference genes

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