Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 3.9e-179 631.3 317 100.0
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.4e-128 463.4 249 90.8
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.5e-125 453.4 249 88.8
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 8.0e-124 447.6 249 88.0
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.0e-123 447.2 249 87.6
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.8e-123 446.4 249 86.7
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.2e-123 444.9 249 86.3
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.5e-122 443.4 249 85.9
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.5e-122 443.4 249 87.1
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 2.6e-122 442.6 246 86.6
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 2.6e-122 442.6 249 87.6
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.5e-122 441.0 249 85.5
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 7.5e-122 441.0 249 86.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 9.8e-122 440.7 249 86.3
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 9.8e-122 440.7 249 86.3
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.7e-121 439.9 249 86.7
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 2.9e-121 439.1 249 85.1
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 4.9e-121 438.3 249 85.9
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 4.9e-121 438.3 249 85.5
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 4.9e-121 438.3 265 82.3
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 6.4e-121 438.0 249 84.7
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 8.3e-121 437.6 249 85.1
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 8.3e-121 437.6 249 85.9
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.1e-120 437.2 249 85.1
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.4e-120 436.8 256 83.2
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 3.2e-120 435.6 249 84.7
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 3.2e-120 435.6 249 85.9
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 4.1e-120 435.3 249 85.1
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 4.1e-120 435.3 241 88.0
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.1e-120 435.3 249 84.7
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 5.4e-120 434.9 249 83.5
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 5.4e-120 434.9 249 84.7
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 5.4e-120 434.9 249 84.7
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 5.4e-120 434.9 249 86.3
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 7.0e-120 434.5 249 85.5
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.5e-119 432.2 246 85.0
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.7e-118 429.9 249 83.9
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 6.6e-118 427.9 249 83.9
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 8.6e-118 427.6 246 84.6
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 1.1e-117 427.2 249 83.9
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.5e-117 426.8 246 83.7
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 2.5e-117 426.0 246 83.7
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.5e-117 426.0 249 82.3
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 5.6e-117 424.9 249 83.1
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 5.6e-117 424.9 249 82.3
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 7.3e-117 424.5 249 82.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 7.3e-117 424.5 249 81.1
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 9.5e-117 424.1 246 82.9
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.2e-116 423.7 249 80.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.2e-116 423.7 249 82.7
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.2e-116 423.7 249 83.5
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 1.6e-116 423.3 249 84.3
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.6e-116 423.3 249 83.9
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 2.1e-116 422.9 246 82.5
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 2.1e-116 422.9 249 82.3
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 3.6e-116 422.2 246 83.3
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.6e-116 422.2 246 82.9
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.4e-115 420.2 249 82.3
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 1.8e-115 419.9 249 80.7
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.8e-115 419.9 249 80.7
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 2.3e-115 419.5 246 81.3
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 2.3e-115 419.5 249 82.3
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 4.0e-115 418.7 249 81.9
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 4.0e-115 418.7 249 80.3
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 5.2e-115 418.3 249 81.5
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 6.8e-115 417.9 249 78.7
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 6.8e-115 417.9 249 80.3
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 6.8e-115 417.9 249 80.7
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 8.9e-115 417.5 249 78.3
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.2e-114 417.2 249 81.5
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.2e-114 417.2 249 80.7
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.2e-114 417.2 266 76.3
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.5e-114 416.8 249 81.5
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-114 416.8 249 81.5
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 2.0e-114 416.4 249 79.9
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 2.0e-114 416.4 249 80.3
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 3.4e-114 415.6 249 80.7
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 4.4e-114 415.2 249 80.3
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 5.8e-114 414.8 249 81.5
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 5.8e-114 414.8 249 81.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 5.8e-114 414.8 249 81.5
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 7.5e-114 414.5 246 82.9
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 9.8e-114 414.1 249 80.3
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.3e-113 413.7 249 81.1
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 1.3e-113 413.7 249 79.5
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.7e-113 413.3 249 81.1
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.7e-113 413.3 249 79.9
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.2e-113 412.9 249 81.1
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 2.2e-113 412.9 249 79.1
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 3.7e-113 412.1 250 81.2
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 4.9e-113 411.8 249 81.9
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 6.4e-113 411.4 249 80.7
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 6.4e-113 411.4 300 71.7
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.3e-113 411.0 249 79.9
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 8.3e-113 411.0 249 80.3
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.1e-112 410.6 249 79.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 2.4e-112 409.5 249 77.9
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 2.4e-112 409.5 252 79.4
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 3.2e-112 409.1 249 80.3
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 4.1e-112 408.7 275 74.9
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 5.4e-112 408.3 249 78.7
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 7.1e-112 407.9 249 79.9
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.2e-111 407.1 249 80.3
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.1e-111 406.4 249 78.3
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 6.0e-111 404.8 246 78.5
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 7.8e-111 404.4 249 79.5
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.0e-110 404.1 252 79.0
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.3e-110 403.7 249 79.9
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.1e-110 401.7 249 77.9
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 8.6e-110 401.0 263 75.7
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 2.5e-109 399.4 249 78.7
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.5e-109 399.4 271 74.5
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 4.7e-108 395.2 248 77.0
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 8.1e-108 394.4 254 77.6
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.2e-103 380.6 250 75.6
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 9.6e-101 370.9 246 70.3
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.8e-100 369.4 208 87.0
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 3.6e-100 369.0 288 65.3
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 6.2e-100 368.2 241 71.4
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 7.6e-98 361.3 249 71.9
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 7.6e-98 361.3 209 84.2
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.7e-97 360.1 236 72.0
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.8e-97 359.0 209 82.3
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 6.4e-97 358.2 241 70.1
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 8.4e-97 357.8 208 82.2
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 9.3e-96 354.4 208 81.2
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 2.5e-93 346.3 258 69.8
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 1.6e-92 343.6 246 67.5
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.4e-91 339.7 247 67.6
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 5.1e-86 322.0 242 60.3
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.8e-81 305.8 454 41.4
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.4e-81 305.1 249 64.3
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 8.7e-78 294.7 250 58.8
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 9.3e-72 274.6 166 80.7
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 8.7e-70 268.1 221 56.1
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.3e-69 265.8 154 86.4
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 4.8e-68 262.3 148 88.5
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 5.9e-66 255.4 169 75.7
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 4.2e-56 222.6 188 63.3
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 9.1e-51 204.9 248 42.7
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 3.0e-46 189.9 121 76.9
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 1.1e-45 188.0 242 40.5
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.3e-44 182.2 141 61.7
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 5.2e-38 162.5 101 75.2
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.0e-34 150.6 84 84.5
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 9.4e-32 141.7 84 79.8
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 2.3e-25 120.6 71 83.1
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 1.5e-24 117.9 220 30.5
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 8.8e-22 108.6 151 41.1
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.4e-21 106.7 100 61.0
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 1.7e-20 104.4 70 71.4
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.2e-20 104.0 63 74.6
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.3e-20 102.4 161 39.8
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.2e-18 98.2 86 64.0
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 1.9e-16 90.9 121 44.6
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 2.1e-07 60.8 42 64.3
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 3.6e-07 60.1 63 54.0


User provided reference genes

Program Settings