Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 4.6e-97 357.8 174 100.0
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 1.3e-83 313.2 176 88.6
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.5e-76 289.7 176 81.2
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.5e-76 289.7 174 82.2
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.6e-76 288.9 176 80.7
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 4.5e-76 288.1 174 81.0
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 4.5e-76 288.1 174 81.6
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 5.8e-76 287.7 176 80.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 5.8e-76 287.7 175 81.7
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.6e-76 287.3 178 79.2
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.0e-75 287.0 177 82.5
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.0e-75 287.0 177 79.1
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.3e-75 286.6 177 82.5
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.3e-75 286.6 174 80.5
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.3e-75 286.6 174 80.5
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 3.8e-75 285.0 177 81.4
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.8e-75 285.0 176 79.0
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 3.8e-75 285.0 176 79.0
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 3.8e-75 285.0 176 79.0
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 4.9e-75 284.6 177 81.4
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 4.9e-75 284.6 177 81.9
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 6.5e-75 284.3 173 81.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 6.5e-75 284.3 173 80.9
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 8.4e-75 283.9 176 78.4
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 8.4e-75 283.9 177 79.7
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 1.1e-74 283.5 173 81.5
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.4e-74 283.1 177 80.8
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.9e-74 282.7 177 80.8
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 3.2e-74 282.0 176 80.7
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 4.2e-74 281.6 173 79.8
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 4.2e-74 281.6 176 78.4
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 7.1e-74 280.8 176 77.8
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 7.1e-74 280.8 174 80.5
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.1e-74 280.8 174 78.7
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 7.1e-74 280.8 175 81.1
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 9.3e-74 280.4 176 79.0
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.2e-73 280.0 177 78.5
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 4.6e-73 278.1 176 77.3
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.9e-73 277.3 169 79.9
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.0e-72 276.9 176 76.7
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.8e-72 276.2 176 76.7
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.8e-72 276.2 174 79.9
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 2.3e-72 275.8 178 78.7
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 5.1e-72 274.6 176 76.1
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 5.1e-72 274.6 172 76.2
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 5.1e-72 274.6 173 76.3
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 5.1e-72 274.6 176 76.1
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 6.7e-72 274.2 179 74.9
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.1e-71 273.5 178 78.1
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.5e-71 273.1 178 77.0
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.5e-71 273.1 176 75.6
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.9e-71 272.7 174 75.9
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 5.7e-71 271.2 179 73.7
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 5.7e-71 271.2 177 75.1
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 7.4e-71 270.8 175 77.1
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 9.7e-71 270.4 164 79.9
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.3e-70 270.0 166 78.3
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 1.3e-70 270.0 174 75.3
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.6e-70 269.6 165 78.8
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.6e-70 269.6 167 82.0
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 2.2e-70 269.2 174 74.7
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.8e-70 268.9 174 74.7
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 2.8e-70 268.9 175 74.3
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 3.7e-70 268.5 174 74.7
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 1.1e-69 266.9 170 76.5
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.4e-69 266.5 226 63.3
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.4e-69 266.5 167 78.4
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 2.4e-69 265.8 176 73.3
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 4.1e-69 265.0 175 76.6
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.1e-69 265.0 176 75.0
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 5.3e-69 264.6 174 73.0
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 9.0e-69 263.8 182 74.2
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 9.0e-69 263.8 174 75.9
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.2e-68 263.5 173 75.1
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.5e-68 263.1 161 83.2
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.5e-68 263.1 172 73.3
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.0e-68 262.7 178 72.5
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 2.0e-68 262.7 173 74.0
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.6e-68 262.3 175 73.7
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.4e-68 261.9 175 73.7
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.5e-68 261.5 175 73.7
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 5.9e-68 261.2 173 75.7
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 5.9e-68 261.2 167 76.6
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 1.0e-67 260.4 175 73.1
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.0e-67 260.4 166 77.1
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.7e-67 259.6 167 74.9
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 2.9e-67 258.8 167 74.3
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 2.9e-67 258.8 173 72.3
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 3.8e-67 258.5 166 78.3
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 5.0e-67 258.1 166 75.9
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 5.0e-67 258.1 177 71.8
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 5.0e-67 258.1 167 74.3
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 5.0e-67 258.1 167 74.3
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 5.0e-67 258.1 167 74.3
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 5.0e-67 258.1 170 73.5
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 5.0e-67 258.1 176 70.5
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.1e-66 256.9 176 72.7
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.4e-66 256.5 177 71.2
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.9e-66 256.1 177 71.8
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.5e-66 255.8 162 76.5
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 4.2e-66 255.0 166 76.5
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 5.5e-66 254.6 172 72.1
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.2e-66 254.2 167 71.9
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 7.2e-66 254.2 162 75.9
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 7.2e-66 254.2 168 73.8
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 9.3e-66 253.8 174 72.4
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.1e-65 252.7 176 68.2
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.7e-65 252.3 168 74.4
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 2.7e-65 252.3 175 69.7
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 6.1e-65 251.1 167 74.9
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.0e-64 250.4 174 70.7
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-64 249.6 170 71.8
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.1e-64 248.1 171 70.8
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 5.1e-64 248.1 176 67.6
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.9e-63 246.1 167 72.5
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.5e-63 245.7 154 77.9
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 2.5e-63 245.7 169 72.8
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.3e-63 245.0 167 71.9
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 4.3e-63 245.0 168 72.0
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 4.3e-63 245.0 178 68.0
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 5.7e-63 244.6 166 72.9
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 1.3e-62 243.4 175 68.6
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.7e-62 243.0 172 67.4
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.7e-62 243.0 172 67.4
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.8e-61 239.6 156 77.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.8e-61 239.6 161 72.7
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.8e-61 239.6 157 73.9
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 4.1e-61 238.4 175 68.0
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 9.1e-61 237.3 177 65.5
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 5.9e-60 234.6 171 64.3
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 7.7e-60 234.2 157 72.0
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.7e-59 233.0 173 65.9
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.0e-56 223.8 166 66.3
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 4.8e-54 214.9 164 62.8
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 4.8e-54 214.9 165 62.4
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 1.1e-50 203.8 123 85.4
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 7.2e-50 201.1 122 80.3
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 7.2e-50 201.1 122 80.3
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 4.7e-49 198.4 135 70.4
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.4e-48 196.8 119 80.7
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 5.7e-47 191.4 120 76.7
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.1e-45 187.2 191 51.8
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.1e-45 187.2 114 78.9
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 2.0e-44 183.0 111 79.3
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 3.7e-38 162.2 171 48.5
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 5.5e-34 148.3 86 76.7
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.6e-33 145.6 103 68.0
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.7e-33 145.2 95 70.5
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.0e-32 142.1 98 69.4
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.0e-28 129.8 95 72.6
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 2.3e-24 116.3 180 37.8
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 8.9e-24 114.4 60 83.3
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.7e-22 110.2 106 56.6
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.4e-21 107.1 137 43.1
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-18 97.4 112 46.4
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.5e-18 97.1 116 46.6
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 1.0e-16 90.9 174 33.3
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.2e-15 87.4 52 78.8
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-15 85.9 97 47.4
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 1.3e-14 84.0 52 78.8
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 3.2e-13 79.3 48 77.1
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.3e-11 73.2 50 72.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 4.7e-09 65.5 56 66.1
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 8.3e-06 54.7 35 68.6


User provided reference genes

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