Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 0.0e+00 1262.7 646 100.0
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 5.9e-214 748.0 749 58.3
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.7e-96 357.8 778 36.5
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 1.7e-96 357.8 768 37.0
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.0e-89 334.3 743 36.1
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.2e-86 325.1 762 35.6
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 5.9e-81 306.2 692 35.3
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 3.2e-79 300.4 700 35.3
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.9e-72 277.3 710 34.2
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 1.9e-71 274.6 711 34.0
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 4.2e-71 273.5 712 34.1
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 4.2e-71 273.5 776 33.6
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 2.1e-70 271.2 718 34.7
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 5.7e-68 263.1 734 33.7
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.0e-64 252.3 784 31.8
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 6.5e-64 249.6 774 32.2
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.1e-63 248.8 766 32.1
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 5.5e-63 246.5 773 30.9
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 8.8e-61 239.2 671 31.9
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 6.6e-56 223.0 705 31.8
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 6.6e-56 223.0 721 32.2
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 1.8e-53 214.9 751 31.4
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 6.8e-53 213.0 757 31.6
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 1.2e-52 212.2 750 30.5
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 2.9e-51 207.6 258 50.0
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 3.2e-50 204.1 771 29.6
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 1.6e-49 201.8 780 30.6
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 2.8e-46 191.0 703 31.2
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 6.2e-46 189.9 274 45.3
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.6e-44 184.5 734 31.3
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.8e-44 183.3 714 30.8
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.4e-42 178.7 731 30.5
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 9.2e-42 176.0 377 36.6
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.8e-41 172.9 751 29.8
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.8e-41 172.9 726 30.7
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 7.8e-41 172.9 701 28.7
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 3.9e-40 170.6 730 31.2
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 6.6e-40 169.9 709 31.2
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 8.6e-40 169.5 746 30.0
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 4.3e-39 167.2 713 30.0
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.2e-38 165.6 715 28.5
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 1.6e-38 165.2 835 25.3
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 8.1e-38 162.9 610 31.0
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 1.5e-36 158.7 830 25.9
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 4.4e-36 157.1 841 25.6
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 7.5e-36 156.4 701 28.8
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 4.9e-35 153.7 717 27.3
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 4.9e-35 153.7 728 27.9
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 9.2e-34 149.4 320 38.8
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.6e-33 148.7 726 28.2
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.7e-33 147.9 318 38.4
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 6.0e-33 146.7 357 33.6
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 1.0e-32 146.0 686 28.1
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 2.3e-32 144.8 719 26.8
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 3.9e-32 144.1 716 27.0
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 1.9e-31 141.7 716 27.0
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 4.3e-31 140.6 855 24.3
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 5.6e-31 140.2 795 26.2
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 1.1e-29 136.0 715 26.7
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 4.0e-29 134.0 690 27.5
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 8.9e-29 132.9 716 27.2
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 2.0e-28 131.7 690 27.2
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 5.8e-28 130.2 682 27.0
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 7.6e-28 129.8 807 25.5
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 9.9e-28 129.4 785 24.7
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.3e-27 129.0 718 26.5
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 2.2e-27 128.3 757 25.4
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 3.8e-27 127.5 667 26.4
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 8.4e-27 126.3 136 50.7
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 2.4e-26 124.8 703 26.3
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 3.2e-26 124.4 707 25.7
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 4.1e-26 124.0 668 27.1
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 7.1e-26 123.2 681 25.1
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 9.2e-26 122.9 700 26.1
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 3.5e-25 120.9 714 25.9
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 6.0e-25 120.2 190 43.7
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 7.8e-25 119.8 700 28.3
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.0e-24 119.4 700 25.9
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 3.0e-24 117.9 665 26.6
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 1.1e-23 115.9 663 25.2
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.1e-23 115.9 688 27.3
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 2.5e-23 114.8 694 25.9
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 4.7e-22 110.5 707 25.6
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 8.1e-22 109.8 706 24.6
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 5.2e-21 107.1 615 26.5
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 2.0e-20 105.1 675 25.6
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.4e-20 104.0 247 32.0
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 4.4e-20 104.0 781 23.0
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 2.4e-18 98.2 273 28.6
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.6e-17 95.5 719 25.5
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 2.1e-17 95.1 756 24.6
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.3e-16 91.7 344 27.3
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 5.6e-15 87.0 223 31.4
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 4.8e-14 84.0 228 32.5
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 6.2e-14 83.6 691 24.0
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 5.3e-13 80.5 677 23.3
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 4.5e-12 77.4 392 26.8
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 2.9e-11 74.7 256 32.0
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 4.9e-11 73.9 257 31.9
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 9.3e-10 69.7 72 45.8
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 1.2e-09 69.3 670 23.7
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 2.1e-09 68.6 177 34.5
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 3.5e-09 67.8 707 24.2
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.7e-08 63.5 99 35.4
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 8.7e-08 63.2 96 35.4


User provided reference genes

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