Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.3e-139 500.0 308 100.0
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.1e-74 284.3 368 59.2
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 6.1e-68 261.9 368 51.9
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 6.7e-67 258.5 366 49.5
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.0e-63 246.9 342 50.0
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.1e-61 241.1 367 46.3
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.4e-61 240.7 370 47.3
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 4.2e-61 239.2 366 46.4
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 7.2e-61 238.4 361 47.6
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 5.2e-59 232.3 397 47.1
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.7e-59 231.9 393 43.8
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.7e-59 231.9 393 43.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.8e-59 231.5 393 43.8
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 3.3e-58 229.6 372 46.8
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 9.7e-58 228.0 364 45.1
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.7e-57 226.1 366 45.6
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.1e-56 224.6 392 49.0
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.4e-56 223.4 397 43.1
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.2e-55 221.1 366 45.4
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 8.5e-54 214.9 377 44.3
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.2e-52 211.1 354 45.2
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 4.0e-51 206.1 353 43.1
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 4.0e-51 206.1 358 44.1
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 5.2e-51 205.7 383 48.6
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.2e-50 204.5 364 42.6
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.0e-50 203.8 350 46.0
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.5e-50 201.8 385 43.4
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.2e-49 200.3 385 43.1
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 6.3e-49 198.7 384 43.2
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.4e-48 197.6 359 42.1
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 4.1e-48 196.1 381 48.3
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 4.1e-48 196.1 361 40.4
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 5.3e-48 195.7 386 41.5
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 7.0e-48 195.3 355 42.3
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.0e-46 191.4 358 41.6
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.7e-46 190.7 377 41.1
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.7e-46 190.7 355 41.7
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.8e-46 189.5 332 44.6
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.8e-46 189.5 379 40.9
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.5e-45 187.6 385 41.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.5e-45 187.6 385 41.8
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 8.0e-44 181.8 354 40.7
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.0e-43 181.4 365 40.8
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.0e-43 181.4 373 40.2
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 5.7e-42 175.6 372 37.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 5.7e-42 175.6 369 42.3
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.2e-41 173.7 392 37.8
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.8e-41 172.6 362 39.0
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 6.3e-41 172.2 388 39.4
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 8.3e-41 171.8 378 38.6
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 2.4e-40 170.2 421 39.7
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.0e-40 168.7 288 44.4
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 5.9e-39 165.6 398 36.2
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.0e-38 164.9 390 37.7
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 5.0e-38 162.5 344 37.8
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.1e-37 161.4 378 37.6
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 3.3e-37 159.8 388 36.6
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 5.5e-37 159.1 361 36.6
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 2.1e-36 157.1 394 35.8
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 6.1e-36 155.6 389 36.5
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 6.1e-36 155.6 345 42.9
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 8.0e-36 155.2 339 37.5
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 8.0e-36 155.2 382 36.1
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.3e-35 153.7 327 38.8
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 3.0e-35 153.3 342 38.6
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.0e-35 153.3 378 37.3
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 3.0e-35 153.3 366 37.4
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 4.0e-35 152.9 451 32.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 4.0e-35 152.9 366 37.7
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.2e-35 152.5 375 38.1
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 6.8e-35 152.1 365 37.5
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 6.8e-35 152.1 416 35.6
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.4e-34 149.8 386 36.3
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 2.2e-33 147.1 453 32.5
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 3.7e-33 146.4 292 40.1
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 6.3e-33 145.6 363 35.8
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 6.3e-33 145.6 366 36.1
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.4e-32 144.4 424 34.0
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.8e-32 144.1 382 34.6
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 2.4e-32 143.7 452 31.6
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 2.4e-32 143.7 468 32.3
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.1e-32 143.3 378 36.0
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 4.1e-32 142.9 431 33.2
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 4.1e-32 142.9 431 33.2
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 4.1e-32 142.9 451 31.5
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 2.7e-31 140.2 349 36.1
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 4.5e-31 139.4 419 34.1
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 7.8e-31 138.7 483 31.5
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.0e-30 138.3 472 31.4
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.7e-30 137.5 420 37.9
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 3.9e-30 136.3 420 34.8
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 8.6e-30 135.2 465 30.8
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 8.6e-30 135.2 376 33.2
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.9e-29 134.0 383 35.0
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 2.5e-29 133.7 464 31.5
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.5e-29 133.7 455 33.2
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 7.3e-29 132.1 422 34.8
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 9.5e-29 131.7 325 34.8
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 2.8e-28 130.2 297 36.4
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 6.1e-28 129.0 297 36.0
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.0e-27 128.3 324 38.0
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.8e-27 127.5 368 32.6
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.6e-26 123.6 379 32.7
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.4e-26 123.2 331 33.8
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 3.4e-26 123.2 293 35.2
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.3e-25 121.3 324 39.8
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.7e-25 120.9 292 38.4
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 2.2e-25 120.6 345 33.3
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 6.4e-25 119.0 368 32.6
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 2.0e-23 114.0 278 37.4
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 2.3e-22 110.5 330 33.6
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 6.6e-22 109.0 356 30.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 6.6e-22 109.0 257 37.4
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 8.6e-22 108.6 445 32.8
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.3e-21 106.7 369 31.2
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.2e-20 104.8 362 28.7
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.8e-19 100.9 459 29.0
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 2.0e-18 97.4 249 36.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.3e-17 94.7 127 48.8
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.7e-17 93.2 381 28.3
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.1e-16 89.7 308 30.8
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 9.2e-16 88.6 319 30.4
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 3.0e-14 83.6 165 45.5
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 7.3e-13 79.0 99 50.5
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 9.5e-13 78.6 405 30.6
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.3e-11 73.9 357 29.1
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 4.0e-11 73.2 295 29.2
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.2e-10 71.6 94 42.6
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.4e-10 69.7 64 57.8
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 6.4e-09 65.9 81 58.0
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 8.3e-09 65.5 74 52.7
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.1e-08 65.1 61 54.1
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.1e-08 65.1 75 52.0
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 3.2e-08 63.5 61 54.1
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.6e-07 61.2 132 38.6
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-07 60.8 59 54.2
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.0e-06 58.5 131 32.8
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.1e-06 56.2 57 54.4


User provided reference genes

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