Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 6.4e-151 537.3 263 100.0
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 4.6e-109 398.3 265 74.7
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.4e-105 386.7 232 80.2
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.1e-105 385.6 263 72.2
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 3.1e-105 385.6 263 72.2
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 4.1e-105 385.2 263 71.9
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 6.9e-105 384.4 261 69.3
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.5e-104 383.3 264 70.8
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 8.5e-103 377.5 263 70.3
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.1e-102 377.1 264 68.6
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 7.2e-102 374.4 270 68.1
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.2e-101 373.6 269 67.7
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.6e-101 373.2 272 67.6
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 4.6e-101 371.7 269 67.3
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 2.3e-100 369.4 282 65.6
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 5.1e-100 368.2 264 68.9
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.3e-98 363.6 263 65.8
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 6.3e-98 361.3 267 66.3
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 8.2e-98 360.9 263 65.4
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 8.2e-98 360.9 224 76.8
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.1e-97 360.5 286 64.3
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 3.1e-97 359.0 265 64.9
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 3.1e-97 359.0 273 65.2
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 5.3e-97 358.2 266 66.5
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 6.9e-97 357.8 271 66.1
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.2e-96 357.1 270 65.6
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.2e-96 357.1 264 67.4
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.2e-96 357.1 268 67.2
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.2e-96 357.1 263 66.9
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 4.5e-96 355.1 269 65.1
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 5.9e-96 354.8 224 75.4
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 5.9e-96 354.8 241 71.4
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 5.9e-96 354.8 272 64.3
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.7e-96 354.4 274 65.3
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 7.7e-96 354.4 272 64.3
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 1.7e-95 353.2 222 74.8
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 3.8e-95 352.1 272 64.3
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 5.0e-95 351.7 263 65.0
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 1.4e-94 350.1 272 63.6
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.9e-94 349.7 270 66.3
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 4.2e-94 348.6 270 64.8
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 4.2e-94 348.6 264 63.3
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 4.2e-94 348.6 261 65.5
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 5.5e-94 348.2 260 66.2
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 7.2e-94 347.8 266 65.8
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 7.2e-94 347.8 266 65.8
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 7.2e-94 347.8 266 65.8
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 7.2e-94 347.8 224 74.1
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 7.2e-94 347.8 261 65.9
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.2e-93 347.1 231 72.7
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 1.2e-93 347.1 262 65.6
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.2e-93 347.1 266 63.2
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.6e-93 346.7 264 62.5
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.1e-93 346.3 272 64.3
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 2.1e-93 346.3 244 69.7
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 2.7e-93 345.9 260 63.8
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 4.7e-93 345.1 276 62.7
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 4.7e-93 345.1 229 71.6
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 4.7e-93 345.1 229 71.6
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.7e-93 345.1 241 69.3
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 4.7e-93 345.1 281 63.3
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 7.9e-93 344.4 265 64.9
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 7.9e-93 344.4 265 64.9
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 1.0e-92 344.0 270 65.6
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.4e-92 343.6 224 71.9
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 5.2e-92 341.7 263 63.9
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 6.7e-92 341.3 279 62.4
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 1.1e-91 340.5 272 63.6
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 3.3e-91 339.0 223 73.1
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 3.3e-91 339.0 287 61.0
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 4.4e-91 338.6 228 70.6
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 7.4e-91 337.8 271 63.5
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 9.7e-91 337.4 224 71.4
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 2.8e-90 335.9 247 65.2
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.7e-90 335.5 224 71.0
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 4.8e-90 335.1 225 69.8
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 6.3e-90 334.7 268 61.6
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.1e-89 334.0 223 72.2
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.1e-89 334.0 272 61.4
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 3.1e-89 332.4 241 68.5
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 5.3e-89 331.6 223 71.7
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 7.0e-89 331.3 260 61.9
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 1.6e-88 330.1 225 69.8
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.0e-88 329.7 233 68.7
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 4.5e-88 328.6 223 70.4
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.5e-88 328.6 290 58.6
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.9e-87 325.9 222 70.3
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 5.0e-87 325.1 275 60.7
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 8.5e-87 324.3 223 70.0
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.5e-86 323.6 222 69.8
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 1.9e-86 323.2 224 69.2
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 2.5e-86 322.8 257 62.6
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 3.2e-86 322.4 224 68.3
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 4.2e-86 322.0 273 58.6
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.5e-83 313.5 268 57.8
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 3.3e-83 312.4 261 58.6
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 7.5e-83 311.2 323 52.0
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 9.4e-78 294.3 216 63.4
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.2e-77 293.9 186 73.1
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 2.7e-77 292.7 221 63.3
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.7e-74 282.3 271 53.5
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 1.8e-73 280.0 470 38.7
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 2.8e-69 266.2 208 56.7
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 4.0e-68 262.3 222 60.8
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 5.7e-67 258.5 208 56.2
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 1.2e-61 240.7 210 55.7
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 2.0e-59 233.4 163 68.7
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.9e-50 202.2 125 79.2
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 5.4e-49 198.7 211 45.5
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 6.0e-48 195.3 117 77.8
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.3e-47 194.1 208 43.8
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 3.0e-47 193.0 168 57.1
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.7e-42 176.0 106 78.3
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.7e-42 176.0 110 76.4
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.2e-40 171.0 149 59.1
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 9.5e-38 161.4 138 59.4
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.4e-36 156.8 115 68.7
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.6e-35 153.3 116 68.1
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.0e-31 141.4 99 64.6
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 7.8e-24 115.2 83 63.9
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.7e-23 114.0 232 28.9
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 2.4e-17 93.6 88 51.1
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 5.4e-17 92.4 67 62.7
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 7.9e-16 88.6 100 53.0
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 2.2e-10 70.5 98 41.8
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 4.3e-06 56.2 87 34.5


User provided reference genes

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