Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G105911 Manihot esculenta HOM05D008494 ORTHO05D010021 1.6e-56 222.6 117 100.0
Manes.09G182700 Manihot esculenta HOM05D008494 ORTHO05D010021 2.3e-39 165.6 106 81.1
FAN14G1748 Fragaria x ananassa HOM05D008494 ORTHO05D010021 2.3e-28 129.0 107 61.7
QL03p011411 Quercus lobata HOM05D008494 ORTHO05D010021 3.4e-27 125.2 101 64.4
RcHm_v2.0_Chr3g0459041 Rosa chinensis HOM05D008494 ORTHO05D010021 3.4e-27 125.2 107 57.0
Potri.005G000800 Populus trichocarpa HOM05D008494 ORTHO05D010021 6.4e-26 120.9 115 62.6
Ciclev10030055m.g Citrus clementina HOM05D008494 ORTHO05D010021 7.0e-25 117.5 116 56.0
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 4.6e-24 114.8 115 55.7
Potri.013G000100 Populus trichocarpa HOM05D008494 ORTHO05D010021 1.0e-23 113.6 112 58.9
Prupe.6G302200 Prunus persica HOM05D008494 ORTHO05D010021 1.0e-23 113.6 103 59.2
Haze_15004 Corylus avellana HOM05D008494 ORTHO05D010021 2.3e-23 112.5 104 60.6
MD04G1183700 Malus domestica HOM05D008494 ORTHO05D010021 8.6e-23 110.5 110 54.5
Oeu033225.1 Olea europaea HOM05D008494 ORTHO05D010021 1.2e-21 106.7 94 54.3
CiPaw.02G000600 Carya illinoinensis HOM05D008494 ORTHO05D010021 1.6e-21 106.3 117 52.1
DCAR_029308 Daucus carota HOM05D008494 ORTHO05D010021 6.2e-21 104.4 104 54.8
VMungo1383G1264 Vigna mungo HOM05D008494 ORTHO05D010021 1.1e-20 103.6 116 50.0
DCAR_003254 Daucus carota HOM05D008494 ORTHO05D010021 6.8e-20 100.9 105 52.4
Lalb_Chr02g0147351 Lupinus albus HOM05D008494 ORTHO05D010021 6.8e-20 100.9 102 51.0
Atru.chr12.1501 Acer truncatum HOM05D008494 ORTHO05D010021 1.2e-19 100.1 111 56.8
Atru.chr12.1506 Acer truncatum HOM05D008494 ORTHO05D010021 1.2e-19 100.1 111 56.8
Glyma.03G227000 Glycine max HOM05D008494 ORTHO05D010021 2.6e-19 99.0 115 51.3
Peaxi162Scf00194g00512 Petunia axillaris HOM05D008494 ORTHO05D010021 2.6e-19 99.0 103 51.5
Glyma.19G223900 Glycine max HOM05D008494 ORTHO05D010021 7.5e-19 97.4 116 48.3
Lj1g0018830 Lotus japonicus HOM05D008494 ORTHO05D010021 9.8e-19 97.1 115 47.0
Phvul.001G220800 Phaseolus vulgaris HOM05D008494 ORTHO05D010021 1.4e-17 93.2 105 47.6
Medtr7g111200 Medicago truncatula HOM05D008494 ORTHO05D010021 1.9e-17 92.8 110 49.1
Lalb_Chr04g0260271 Lupinus albus HOM05D008494 ORTHO05D010021 7.0e-17 90.9 100 49.0
SGA_v2.0_scaffold311G48250 Striga asiatica HOM05D008494 ORTHO05D010021 1.2e-16 90.1 98 49.0
Oeu000174.1 Olea europaea HOM05D008494 ORTHO05D010021 1.0e-15 87.0 103 47.6
Rhsim11G0107000 Rhododendron simsii HOM05D000136 ORTHO05D000080 3.0e-15 85.5 103 42.7
Peaxi162Scf00071g00117 Petunia axillaris HOM05D008494 ORTHO05D010021 8.6e-15 84.0 100 44.0
Thecc.05G331500 Theobroma cacao HOM05D008494 ORTHO05D010021 1.5e-14 83.2 87 59.8
Dinv30960 Davidia involucrata HOM05D008494 ORTHO05D010021 1.2e-13 80.1 93 52.7
Solyc01g102430.2 Solanum lycopersicum HOM05D008494 ORTHO05D010021 3.6e-13 78.6 92 45.7
Migut.B00913 Erythranthe guttata HOM05D008494 ORTHO05D010021 6.8e-12 74.3 92 46.7
Actinidia17727 Actinidia chinensis HOM05D008494 ORTHO05D010021 2.0e-11 72.8 59 57.6
Hma1.2p1_0157F.1_g069490 Hydrangea macrophylla HOM05D008494 ORTHO05D010021 2.6e-11 72.4 67 52.2
Sed0011896 Sechium edule HOM05D008494 ORTHO05D010021 7.5e-11 70.9 94 42.6
TPR.G1638 Trifolium pratense HOM05D008494 ORTHO05D010021 9.9e-11 70.5 87 48.3
Nitab4.5_0004090g0020 Nicotiana tabacum HOM05D008494 ORTHO05D010021 1.7e-10 69.7 78 50.0
ECA234G2754 Erigeron canadensis HOM05D008494 ORTHO05D010021 6.4e-10 67.8 115 31.3
Carub.0006s2421 Capsella rubella HOM05D003663 ORTHO05D010021 1.1e-09 67.0 92 44.6
Thhalv10005177m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 1.9e-09 66.2 91 41.8
Lalb_Chr21g0309951 Lupinus albus HOM05D008494 ORTHO05D010021 1.9e-09 66.2 66 47.0
arahy.Tifrunner.gnm1.ann1.J2KNI4 Arachis hypogaea HOM05D008494 ORTHO05D010021 4.1e-09 65.1 107 38.3
CARHR186970 Cardamine hirsuta HOM05D003663 ORTHO05D010021 7.1e-09 64.3 86 45.3
Sp2g21380 Schrenkiella parvula HOM05D003663 ORTHO05D010021 1.6e-08 63.2 85 42.4
Nn4g25250 Nelumbo nucifera HOM05D008494 ORTHO05D010021 3.5e-08 62.0 87 40.2
CsaV3_2G007440 Cucumis sativus L. HOM05D008494 ORTHO05D010021 4.6e-08 61.6 101 47.5
C02p59100 Brassica napus HOM05D003663 ORTHO05D010021 1.0e-07 60.5 90 40.0
Thhalv10021806m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 2.3e-07 59.3 90 44.4
Carub.0003s0532 Capsella rubella HOM05D003663 ORTHO05D010021 5.1e-07 58.2 96 40.6
THA.LOC104803108 Tarenaya hassleriana HOM05D003663 ORTHO05D010021 8.6e-07 57.4 90 40.0
BcaB04g19228 Brassica carinata HOM05D003663 ORTHO05D010021 1.1e-06 57.0 93 38.7
BcaC01g04309 Brassica carinata HOM05D003663 ORTHO05D010021 1.1e-06 57.0 93 38.7
A03p34380 Brassica napus HOM05D003663 ORTHO05D010021 1.1e-06 57.0 93 38.7
C03p41850 Brassica napus HOM05D003663 ORTHO05D010021 1.1e-06 57.0 93 38.7
BolC3t16468H Brassica oleracea HOM05D003663 ORTHO05D010021 1.1e-06 57.0 93 38.7
CARHR080410 Cardamine hirsuta HOM05D003663 ORTHO05D010021 1.9e-06 56.2 91 41.8
BcaB04g19233 Brassica carinata HOM05D003663 ORTHO05D010021 9.5e-06 53.9 93 37.6
BraA03t12614Z Brassica rapa HOM05D003663 ORTHO05D010021 9.5e-06 53.9 93 37.6
Sp3g04840 Schrenkiella parvula HOM05D003663 ORTHO05D010021 9.5e-06 53.9 92 37.0


User provided reference genes

Program Settings