Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.2e-79 299.7 135 100.0
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.7e-75 285.8 135 94.1
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.4e-71 271.6 135 86.7
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 9.8e-71 270.0 135 85.2
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.2e-70 268.9 135 85.2
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 4.1e-69 264.6 135 82.2
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.2e-68 263.1 135 80.7
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 2.0e-68 262.3 135 81.5
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.7e-68 261.9 135 82.2
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 2.3e-67 258.8 135 80.0
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 6.6e-67 257.3 147 77.6
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 8.6e-67 256.9 135 79.3
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.5e-66 256.1 135 79.3
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 1.9e-66 255.8 135 81.5
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 4.3e-66 254.6 148 77.0
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.2e-65 253.1 135 78.5
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.6e-65 252.7 134 79.9
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 1.6e-65 252.7 133 79.7
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 2.1e-65 252.3 135 78.5
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.1e-65 252.3 135 78.5
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.8e-65 251.9 147 77.6
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.4e-64 249.6 153 74.5
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.3e-64 248.8 135 77.8
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 2.3e-64 248.8 126 84.1
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 3.0e-64 248.4 123 86.2
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 4.0e-64 248.1 135 76.3
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 4.0e-64 248.1 145 74.5
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 5.2e-64 247.7 135 77.8
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 6.8e-64 247.3 143 76.2
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.9e-64 246.9 150 72.7
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 8.9e-64 246.9 148 76.4
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.2e-63 246.5 148 75.0
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.2e-63 246.5 135 77.0
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.6e-63 245.4 152 71.7
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 4.4e-63 244.6 153 71.2
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.7e-63 244.2 137 76.6
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.7e-63 244.2 137 76.6
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.7e-63 244.2 137 76.6
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 7.5e-63 243.8 150 72.7
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.3e-62 243.0 135 77.0
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.3e-62 243.0 135 75.6
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.7e-62 242.7 130 80.8
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 3.7e-62 241.5 148 73.0
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 4.9e-62 241.1 135 78.5
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 6.4e-62 240.7 123 84.6
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 8.3e-62 240.4 135 75.6
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.8e-61 239.2 135 74.8
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.8e-61 239.2 135 74.8
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 2.4e-61 238.8 159 65.4
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 3.2e-61 238.4 136 76.5
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 3.2e-61 238.4 136 76.5
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.2e-61 238.4 153 70.6
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 4.1e-61 238.0 136 75.7
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 4.1e-61 238.0 149 72.5
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 4.1e-61 238.0 141 73.8
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 5.4e-61 237.7 135 74.8
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 5.4e-61 237.7 135 74.8
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 5.4e-61 237.7 142 74.6
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 5.4e-61 237.7 153 70.6
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 7.0e-61 237.3 144 73.6
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 7.0e-61 237.3 153 70.6
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 9.2e-61 236.9 135 74.8
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 9.2e-61 236.9 157 68.8
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 74.1
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.6e-60 236.1 135 74.8
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.7e-60 235.3 131 76.3
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.7e-60 235.3 135 74.8
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.7e-60 235.3 159 67.9
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 3.5e-60 235.0 135 74.1
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 3.5e-60 235.0 135 74.1
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.6e-60 234.6 131 76.3
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 74.1
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 73.3
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 7.8e-60 233.8 122 80.3
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.3e-59 233.0 133 75.2
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.3e-59 233.0 131 75.6
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 72.6
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 3.0e-59 231.9 132 75.8
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 3.0e-59 231.9 132 76.5
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.6e-59 230.7 147 68.0
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.1e-58 229.9 147 68.0
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.1e-58 229.9 123 79.7
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.9e-58 229.2 147 67.3
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 1.9e-58 229.2 133 75.2
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 3.3e-58 228.4 138 73.9
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 4.3e-58 228.0 151 67.5
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 4.3e-58 228.0 151 67.5
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 4.7e-57 224.6 135 72.6
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 4.7e-57 224.6 149 66.4
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 6.2e-57 224.2 145 67.6
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 1.4e-56 223.0 122 76.2
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 1.5e-55 219.5 142 68.3
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 3.4e-55 218.4 130 69.2
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 3.4e-55 218.4 139 69.8
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 7.5e-55 217.2 130 69.2
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 9.8e-55 216.9 123 72.4
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 1.3e-54 216.5 167 59.3
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.7e-54 216.1 133 67.7
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 2.9e-54 215.3 135 68.1
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 2.9e-54 215.3 135 70.4
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 2.4e-53 212.2 130 73.8
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.1e-53 211.5 126 69.8
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.2e-52 209.9 134 70.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 1.6e-52 209.5 143 65.0
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.0e-51 206.8 154 64.9
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.3e-51 206.5 148 62.8
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.3e-48 195.7 113 73.5
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.3e-48 195.7 113 73.5
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 8.9e-48 193.7 123 68.3
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 9.8e-47 190.3 159 53.5
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.3e-43 179.9 173 51.4
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 8.9e-40 167.2 105 65.7
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 5.8e-39 164.5 119 58.0
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.9e-37 159.5 124 56.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.7e-35 152.9 136 51.5
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 3.0e-35 152.1 126 52.4
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 3.3e-34 148.7 87 73.6
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.6e-33 146.4 144 49.3
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 4.7e-33 144.8 75 81.3
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 2.7e-28 129.0 59 93.2
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.1e-26 123.6 58 86.2
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 4.2e-21 105.1 115 47.8
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-17 92.8 54 66.7
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.6e-17 92.0 72 58.3
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-16 90.5 81 50.6
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 6.9e-16 87.8 80 50.0
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.5e-15 86.7 105 43.8
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.5e-15 86.7 80 48.8
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 4.5e-15 85.1 109 41.3
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 8.4e-14 80.9 75 54.7
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 5.1e-11 71.6 120 35.0
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 5.1e-11 71.6 40 72.5
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.9e-10 69.7 49 59.2
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 5.6e-10 68.2 111 33.3
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 9.6e-10 67.4 102 34.3
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.6e-09 66.6 46 58.7
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.6e-09 66.6 46 58.7
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.1e-09 66.2 47 57.4
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 1.1e-08 63.9 53 56.6
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.8e-08 63.2 47 55.3
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 1.7e-06 56.6 48 50.0


User provided reference genes

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