Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.6e-247 857.8 443 100.0
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.8e-230 802.4 441 93.0
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.3e-217 759.6 442 89.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.8e-215 751.9 444 87.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 6.9e-214 747.3 444 88.3
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 3.4e-213 745.0 444 86.5
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.1e-211 740.0 443 86.2
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.2e-211 738.4 443 86.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 5.4e-211 737.6 444 85.4
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 7.1e-211 737.3 445 86.7
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.2e-210 736.5 444 85.6
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.6e-210 736.1 443 85.3
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.6e-210 736.1 444 86.0
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 7.8e-210 733.8 444 86.5
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.3e-209 733.0 445 84.7
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 6.6e-209 730.7 445 85.4
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.5e-208 729.6 447 85.2
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 7.3e-208 727.2 442 85.7
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.3e-207 726.5 446 84.5
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.3e-207 726.5 442 85.5
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.6e-207 726.1 445 84.7
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.6e-207 726.1 442 85.5
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.1e-207 725.7 443 85.3
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.1e-207 725.7 446 84.1
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.1e-207 725.7 447 85.0
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 4.8e-207 724.5 441 83.0
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 4.8e-207 724.5 441 83.0
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.4e-206 723.0 442 84.8
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.2e-205 719.9 443 83.7
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.2e-205 719.9 442 83.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.5e-205 719.5 445 84.3
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.5e-205 719.5 444 83.1
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.0e-205 719.2 444 83.8
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.6e-205 718.8 398 89.4
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 3.4e-205 718.4 444 83.6
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 3.4e-205 718.4 443 84.2
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 5.8e-205 717.6 443 83.7
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 5.8e-205 717.6 444 84.5
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.7e-204 716.1 444 83.3
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.9e-204 715.3 442 83.5
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 3.8e-204 714.9 445 83.4
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.9e-204 714.5 441 83.9
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.2e-203 711.8 445 83.4
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 4.2e-203 711.4 443 82.4
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.4e-203 711.1 444 83.8
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 5.4e-203 711.1 443 83.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 7.1e-203 710.7 443 82.2
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.2e-202 709.9 444 82.4
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.2e-202 709.9 444 83.1
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.2e-202 709.9 443 83.3
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.2e-202 709.9 441 83.2
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.6e-202 709.5 443 82.4
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 2.7e-202 708.8 441 82.8
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 7.9e-202 707.2 443 82.8
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.0e-201 706.8 443 82.8
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 2.3e-201 705.7 445 82.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 3.9e-201 704.9 443 82.6
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 5.1e-201 704.5 397 87.7
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 6.7e-201 704.1 421 85.5
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 8.7e-201 703.7 439 81.3
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.1e-200 703.4 441 82.3
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.5e-200 703.0 441 81.0
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.6e-199 699.5 441 81.6
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 2.1e-199 699.1 445 80.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.1e-198 696.8 441 81.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 6.9e-198 694.1 441 81.4
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 9.0e-198 693.7 424 83.5
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.2e-197 693.3 439 80.6
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.6e-197 692.2 445 79.6
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 2.6e-197 692.2 442 80.5
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 4.5e-197 691.4 441 81.6
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 4.5e-197 691.4 450 79.8
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 5.8e-197 691.0 443 81.3
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 7.6e-197 690.6 445 79.8
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 7.6e-197 690.6 444 81.8
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 9.9e-197 690.3 441 81.6
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.7e-196 689.5 441 81.9
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.2e-196 689.1 399 85.7
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 4.9e-196 688.0 443 81.0
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 8.4e-196 687.2 399 85.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.5e-195 685.6 441 81.2
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.5e-195 685.6 441 81.2
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 3.5e-194 681.8 442 80.3
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 7.9e-194 680.6 441 80.0
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 7.9e-194 680.6 441 80.0
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 1.8e-193 679.5 441 81.4
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.8e-193 679.5 443 81.0
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.8e-193 679.5 398 86.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.8e-193 679.5 442 79.9
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 8.7e-193 677.2 439 80.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.5e-192 675.6 416 83.4
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 3.3e-192 675.2 441 80.5
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 5.6e-192 674.5 441 80.7
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.6e-191 672.9 390 87.2
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.7e-191 671.8 415 82.9
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 4.8e-191 671.4 444 79.7
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.1e-190 670.2 448 79.5
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.4e-190 669.8 441 80.0
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.4e-190 669.8 424 80.7
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 2.4e-190 669.1 441 80.0
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 4.5e-189 664.8 441 78.7
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 4.5e-189 664.8 441 78.7
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 7.6e-189 664.1 440 78.4
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.2e-188 662.5 387 84.5
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.4e-187 659.8 438 77.9
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.4e-187 659.8 440 78.0
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-186 656.8 444 78.4
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-186 656.8 444 78.4
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 1.1e-184 650.2 441 76.0
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.6e-183 646.4 391 84.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 3.7e-183 645.2 444 75.5
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 6.3e-183 644.4 398 80.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 6.3e-183 644.4 421 78.4
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.4e-182 643.3 442 78.1
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 6.9e-182 641.0 485 71.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.6e-181 639.0 399 80.5
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 3.8e-180 635.2 398 79.9
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.9e-179 632.9 516 67.1
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.0e-172 610.5 369 87.0
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 2.9e-172 609.0 444 74.3
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.0e-172 608.2 382 82.7
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 6.5e-172 607.8 446 74.2
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 3.2e-163 578.9 392 78.1
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 6.5e-156 554.7 387 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.7e-154 549.3 404 68.8
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 2.7e-154 549.3 307 90.2
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 4.4e-152 542.0 365 79.2
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 3.7e-151 538.9 409 64.1
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.3e-148 530.4 363 70.5
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.0e-145 520.8 370 69.7
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.2e-144 517.3 409 63.8
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 9.8e-144 514.2 404 64.9
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-143 513.8 410 63.9
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-143 513.5 410 63.9
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.7e-143 513.5 378 66.7
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.8e-143 512.7 389 67.1
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 5.4e-142 508.4 366 66.4
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 7.0e-142 508.1 361 71.5
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.6e-138 496.9 406 63.3
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.5e-136 490.3 374 63.6
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 4.1e-134 482.3 317 78.5
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.9e-133 478.4 377 62.6
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.1e-130 469.9 360 63.6
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.4e-118 430.6 365 62.2
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 2.7e-101 373.2 359 56.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 7.1e-94 348.6 302 60.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 8.7e-84 315.1 215 74.0
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.9e-71 273.5 187 78.6
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.2e-69 268.1 329 44.4
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 7.2e-62 242.3 139 89.9
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 6.1e-61 239.2 199 61.8
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.0e-60 238.4 123 89.4
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 9.1e-57 225.3 160 70.6
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.7e-42 176.8 162 57.4
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 4.5e-40 169.9 119 72.3
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.6e-37 161.4 165 59.4
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 6.3e-34 149.4 81 91.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.7e-31 141.4 82 85.4
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 3.6e-29 133.7 112 58.0
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.7e-26 123.6 80 70.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.4e-20 105.1 74 64.9
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 9.8e-19 99.0 51 86.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.0e-15 87.4 94 52.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.0e-07 62.4 35 82.9


User provided reference genes

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