Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 4.7e-85 318.2 204 100.0
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 5.5e-49 198.4 232 53.9
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 1.1e-46 190.7 232 51.7
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 4.1e-36 155.6 228 49.1
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 2.7e-32 142.9 229 42.8
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 7.9e-32 141.4 227 38.8
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 2.6e-30 136.3 156 50.0
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 9.7e-30 134.4 245 38.8
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 4.5e-27 125.6 231 38.5
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 7.7e-27 124.8 231 38.1
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.3e-26 124.0 154 46.8
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 1.7e-26 123.6 237 38.8
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 2.2e-26 123.2 159 46.5
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 2.2e-26 123.2 227 37.9
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 3.8e-26 122.5 138 51.4
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 3.2e-25 119.4 164 42.7
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 4.2e-25 119.0 220 40.5
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 9.4e-25 117.9 243 34.2
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 9.4e-25 117.9 164 43.9
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 9.4e-25 117.9 242 34.7
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 3.6e-24 115.9 230 37.0
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 4.7e-24 115.5 161 43.5
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.0e-23 114.4 161 43.5
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 1.4e-23 114.0 211 37.0
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.4e-23 114.0 161 43.5
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.3e-23 113.2 150 44.7
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 3.0e-23 112.8 160 44.4
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 5.2e-23 112.1 163 45.4
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 5.2e-23 112.1 243 35.8
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 6.7e-23 111.7 150 44.0
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 6.7e-23 111.7 150 44.0
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 6.7e-23 111.7 161 42.9
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 8.8e-23 111.3 173 40.5
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 1.1e-22 110.9 227 33.9
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 1.1e-22 110.9 227 35.2
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 5.7e-22 108.6 163 44.8
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 5.7e-22 108.6 156 44.2
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 5.7e-22 108.6 165 39.4
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 7.4e-22 108.2 237 41.8
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 7.4e-22 108.2 150 43.3
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 7.4e-22 108.2 163 39.9
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 1.3e-21 107.5 164 39.0
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 2.2e-21 106.7 164 39.0
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 3.7e-21 105.9 227 37.0
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 3.7e-21 105.9 239 34.3
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 4.8e-21 105.5 157 41.4
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 6.3e-21 105.1 228 37.3
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.4e-20 103.2 165 41.2
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 3.1e-20 102.8 155 42.6
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 3.1e-20 102.8 228 36.8
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 4.1e-20 102.4 160 39.4
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 9.1e-20 101.3 161 42.9
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.0e-19 100.1 154 42.2
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 2.0e-19 100.1 233 32.6
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 2.6e-19 99.8 223 34.5
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 5.9e-19 98.6 163 41.1
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 5.9e-19 98.6 166 39.8
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 5.9e-19 98.6 159 42.8
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 7.7e-19 98.2 162 39.5
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 1.3e-18 97.4 165 37.0
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 1.7e-18 97.1 275 29.1
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.7e-18 97.1 164 41.5
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 2.9e-18 96.3 230 32.6
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 2.9e-18 96.3 206 35.9
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 3.8e-18 95.9 165 40.0
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 5.0e-18 95.5 231 31.6
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.1e-17 94.4 230 32.2
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.9e-17 93.6 164 40.2
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 3.2e-17 92.8 231 33.3
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 3.2e-17 92.8 231 31.2
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 3.2e-17 92.8 252 31.7
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 4.2e-17 92.4 170 38.8
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 1.2e-16 90.9 159 39.6
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 1.2e-16 90.9 144 39.6
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 4.7e-16 89.0 159 38.4
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 6.1e-16 88.6 231 32.0
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 6.1e-16 88.6 154 38.3
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 8.0e-16 88.2 233 32.6
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 1.0e-15 87.8 160 38.1
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 1.0e-15 87.8 146 39.7
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 2.3e-15 86.7 161 36.0
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.3e-15 86.7 178 34.3
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 3.0e-15 86.3 147 37.4
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 3.0e-15 86.3 167 37.1
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 4.0e-15 85.9 178 34.3
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 6.7e-15 85.1 63 61.9
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 6.7e-15 85.1 159 37.1
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 1.5e-14 84.0 70 58.6
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 3.3e-14 82.8 268 28.0
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 4.4e-14 82.4 164 37.8
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 7.5e-14 81.6 63 58.7
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 2.2e-13 80.1 164 37.2
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 2.2e-13 80.1 155 36.1
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 4.8e-13 79.0 156 35.9
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 4.8e-13 79.0 157 36.9
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 6.3e-13 78.6 155 35.5
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 8.2e-13 78.2 155 35.5
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 1.1e-12 77.8 158 33.5
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 2.4e-12 76.6 237 29.5
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 7.0e-12 75.1 155 34.2
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 9.1e-12 74.7 102 42.2
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 1.2e-11 74.3 159 35.8
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.0e-11 73.6 162 37.0
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 2.0e-11 73.6 148 34.5
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 2.0e-11 73.6 148 34.5
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 2.0e-11 73.6 63 54.0
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.9e-10 69.7 69 44.9
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 3.8e-10 69.3 166 35.5
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 6.5e-10 68.6 165 33.3
Nn3g20876 Nelumbo nucifera HOM05D005900 ORTHO05D007306 1.5e-09 67.4 43 65.1
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 3.2e-09 66.2 151 33.8
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 2.7e-08 63.2 171 33.3
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 8.0e-08 61.6 137 36.5
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 8.0e-08 61.6 167 31.7
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 8.0e-08 61.6 170 33.5
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 2.6e-06 56.6 153 30.1
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 7.5e-06 55.1 152 32.2


User provided reference genes

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