Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.3e-91 339.0 181 100.0
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.5e-55 218.8 191 67.5
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.5e-53 212.6 186 62.9
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.5e-53 211.5 184 63.0
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.1e-52 209.5 186 62.4
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.0e-51 205.7 196 63.3
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 8.8e-51 204.1 198 62.1
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 4.4e-50 201.8 189 62.4
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 5.7e-50 201.4 190 60.5
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 7.5e-50 201.1 195 61.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.3e-49 200.3 198 61.6
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.7e-49 199.9 190 62.1
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.2e-49 199.5 197 62.9
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.8e-49 199.1 190 66.3
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.4e-48 196.8 190 62.1
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.8e-48 196.4 196 60.7
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 9.1e-48 194.1 207 58.9
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.0e-47 193.0 193 58.5
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.9e-47 191.4 191 59.7
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 6.6e-46 188.0 186 59.1
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 8.6e-46 187.6 190 58.4
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.5e-45 184.9 194 58.2
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 7.2e-45 184.5 190 57.9
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 7.2e-45 184.5 190 57.9
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 9.5e-45 184.1 182 58.2
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.6e-44 183.3 191 60.2
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-44 182.2 185 56.2
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-44 182.2 189 56.6
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 6.1e-44 181.4 216 50.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 6.1e-44 181.4 189 55.0
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 8.0e-44 181.0 189 60.3
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.0e-43 180.6 182 57.1
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-43 179.9 190 56.3
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-43 179.9 190 57.4
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.8e-43 179.9 190 57.4
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.8e-43 179.9 190 57.4
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 2.3e-43 179.5 189 59.8
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.8e-43 177.9 201 59.2
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 8.9e-43 177.6 191 55.0
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.2e-42 177.2 190 54.7
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.4e-42 175.3 191 56.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.7e-42 174.9 189 56.1
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-41 172.6 182 56.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 2.8e-41 172.6 194 54.6
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.8e-41 172.6 189 55.6
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 3.7e-41 172.2 186 54.8
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 4.9e-41 171.8 188 58.5
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 4.9e-41 171.8 210 51.4
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 8.3e-41 171.0 192 57.8
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-40 169.9 182 55.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.4e-40 168.3 192 55.7
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 7.0e-40 167.9 187 53.5
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 7.0e-40 167.9 206 48.1
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.2e-40 167.5 184 57.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 9.2e-40 167.5 196 52.0
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.7e-39 166.0 197 53.3
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 2.7e-39 166.0 188 54.8
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.0e-38 164.1 214 50.9
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.0e-38 164.1 207 49.3
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.3e-38 162.9 189 56.6
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.9e-38 162.5 211 48.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 3.9e-38 162.2 171 59.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.9e-38 162.2 191 53.9
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.0e-38 161.8 189 56.6
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 8.6e-38 161.0 166 56.0
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.9e-37 159.8 214 48.6
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-37 159.8 183 56.8
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.9e-37 159.8 183 56.8
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.6e-37 158.3 183 56.3
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.2e-36 157.1 205 46.3
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.1e-36 156.4 165 57.6
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 3.6e-36 155.6 190 47.4
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.6e-36 155.6 225 42.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 3.6e-36 155.6 196 49.5
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 4.7e-36 155.2 177 53.7
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 4.7e-36 155.2 201 51.7
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 6.1e-36 154.8 212 47.2
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-35 154.1 166 56.0
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.0e-35 154.1 194 51.5
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.4e-35 153.7 185 53.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.4e-35 153.7 212 44.3
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.8e-35 153.3 209 46.9
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 2.3e-35 152.9 182 49.5
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 4.0e-35 152.1 184 52.2
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 5.2e-35 151.8 166 55.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 5.2e-35 151.8 209 47.8
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 5.2e-35 151.8 190 51.6
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 6.8e-35 151.4 210 47.6
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 8.9e-35 151.0 206 47.6
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 2.6e-34 149.4 213 47.4
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.6e-34 149.4 210 45.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 3.4e-34 149.1 218 45.0
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 4.4e-34 148.7 211 46.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 5.8e-34 148.3 195 50.8
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 5.8e-34 148.3 203 48.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 9.8e-34 147.5 181 48.6
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.3e-33 147.1 205 47.8
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.7e-33 146.7 209 47.4
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.2e-33 146.4 214 44.4
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 4.9e-33 145.2 191 49.7
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.9e-33 145.2 210 44.3
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 4.1e-32 142.1 197 48.7
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 9.2e-32 141.0 201 46.8
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.6e-31 140.2 207 45.9
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 2.7e-31 139.4 207 44.4
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 3.5e-31 139.0 165 53.9
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 4.6e-31 138.7 200 45.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.3e-30 136.3 216 40.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.9e-29 133.3 187 48.1
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.5e-29 132.9 191 47.6
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.6e-29 131.7 187 45.5
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 9.5e-29 131.0 193 45.1
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.2e-28 130.6 215 41.9
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.6e-28 130.2 190 47.4
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.8e-28 129.4 219 42.5
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 4.7e-28 128.6 190 47.4
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.8e-27 126.7 211 42.2
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.5e-26 123.6 238 39.5
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 4.4e-26 122.1 202 44.6
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 4.4e-26 122.1 160 51.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 4.4e-26 122.1 203 42.4
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 9.8e-26 120.9 202 41.1
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.9e-25 119.4 85 72.9
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.7e-25 119.0 218 40.4
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.4e-25 118.2 201 41.8
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.4e-24 117.1 185 44.3
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.4e-24 117.1 212 42.0
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.4e-24 116.3 182 40.1
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.4e-24 116.3 193 44.6
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 4.1e-24 115.5 209 41.1
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.6e-23 113.6 183 41.0
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 3.5e-23 112.5 242 35.1
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.3e-22 109.8 109 57.8
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.3e-22 109.8 205 38.0
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.3e-22 109.8 229 36.2
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 5.1e-22 108.6 194 40.7
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.6e-22 108.2 178 39.9
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.3e-21 105.9 179 39.1
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.2e-20 104.0 199 36.7
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.6e-20 102.4 74 73.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.2e-20 101.7 176 44.9
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 6.2e-20 101.7 180 37.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.1e-19 99.4 186 38.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 5.2e-19 98.6 84 61.9
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.5e-18 97.1 182 36.8
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-18 97.1 182 36.8
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.5e-18 97.1 182 36.8
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.5e-18 97.1 203 36.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 3.4e-18 95.9 181 38.1
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 7.5e-18 94.7 185 36.2
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 9.9e-18 94.4 174 39.1
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.3e-17 94.0 190 36.8
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-17 93.2 177 37.9
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 2.2e-17 93.2 177 37.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.9e-17 92.8 181 37.0
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.7e-17 92.4 155 40.6
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.7e-17 92.4 155 40.6
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 8.3e-17 91.3 177 37.3
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.9e-16 90.1 150 42.0
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 5.4e-16 88.6 70 65.7
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.7e-14 83.6 201 35.3
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.9e-14 82.4 188 37.8
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 2.5e-13 79.7 178 35.4
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 1.6e-12 77.0 228 30.7
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.6e-12 77.0 190 36.8
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 4.7e-12 75.5 182 36.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 4.7e-12 75.5 176 34.7
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.8e-11 73.6 119 42.9
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 7.6e-10 68.2 155 34.8
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.7e-09 67.0 171 33.3
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.4e-08 63.9 171 33.3
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 9.3e-08 61.2 186 28.0
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 2.7e-07 59.7 164 29.3
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.6e-07 58.9 162 32.1
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 2.3e-06 56.6 191 30.9
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 3.9e-06 55.8 164 29.9
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 5.1e-06 55.5 215 29.3
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 5.1e-06 55.5 166 31.9
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 8.7e-06 54.7 187 30.5


User provided reference genes

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