Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 6.7e-142 507.3 248 100.0
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.1e-99 367.1 205 84.9
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 5.4e-99 364.8 205 83.9
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 5.4e-99 364.8 205 83.9
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 3.8e-97 358.6 204 81.9
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 5.0e-97 358.2 209 82.3
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 6.6e-97 357.8 202 83.7
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.1e-96 357.1 205 83.4
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 2.5e-96 355.9 205 81.0
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 4.7e-95 351.7 205 82.4
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 8.0e-95 350.9 203 80.8
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 1.0e-94 350.5 205 81.0
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 3.0e-94 349.0 205 80.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 5.2e-94 348.2 205 81.5
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 6.8e-94 347.8 205 81.0
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 6.8e-94 347.8 205 79.5
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.2e-93 347.1 205 80.0
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.5e-93 346.7 208 79.3
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 2.0e-93 346.3 205 80.0
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 3.4e-93 345.5 205 78.5
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 5.7e-93 344.7 205 80.0
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 9.8e-93 344.0 205 78.5
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.7e-92 343.2 202 80.7
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.2e-92 342.8 205 79.5
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 2.8e-92 342.4 205 80.0
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 2.8e-92 342.4 205 79.0
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 2.8e-92 342.4 204 80.4
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 3.7e-92 342.0 207 78.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 4.9e-92 341.7 205 79.0
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 6.3e-92 341.3 198 81.3
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.1e-91 340.5 205 79.0
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.4e-91 340.1 206 77.2
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.8e-91 339.7 205 81.0
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 1.8e-91 339.7 205 78.0
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 2.4e-91 339.3 206 78.2
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.4e-91 339.3 205 77.6
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 3.1e-91 339.0 196 81.1
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 3.1e-91 339.0 196 81.1
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 3.1e-91 339.0 217 77.0
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 3.1e-91 339.0 205 80.5
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 3.1e-91 339.0 207 79.2
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 4.1e-91 338.6 206 77.7
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 4.1e-91 338.6 204 78.9
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 7.0e-91 337.8 206 77.2
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 7.0e-91 337.8 198 81.3
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.2e-90 337.0 203 76.8
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.6e-90 336.7 205 79.0
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 2.0e-90 336.3 205 78.5
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 2.0e-90 336.3 206 78.2
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 2.7e-90 335.9 210 76.2
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 3.5e-90 335.5 206 76.7
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 5.9e-90 334.7 210 75.7
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 7.8e-90 334.3 206 79.6
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.3e-89 333.6 212 75.5
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.3e-89 333.6 205 77.1
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 1.3e-89 333.6 201 78.6
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.3e-89 333.6 203 77.3
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 2.3e-89 332.8 205 77.6
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 2.9e-89 332.4 198 79.8
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 2.9e-89 332.4 198 80.3
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 3.8e-89 332.0 195 82.6
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 3.8e-89 332.0 205 75.6
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 5.0e-89 331.6 205 75.6
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 5.0e-89 331.6 196 79.1
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 6.6e-89 331.3 196 80.6
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 6.6e-89 331.3 203 76.8
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.5e-88 330.1 208 75.5
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 2.5e-88 329.3 198 78.8
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 3.3e-88 328.9 195 80.5
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 7.3e-88 327.8 206 75.2
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 7.3e-88 327.8 205 76.6
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.2e-87 327.0 195 80.0
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 2.1e-87 326.2 196 80.1
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 4.7e-87 325.1 199 78.4
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 4.7e-87 325.1 196 79.6
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 8.0e-87 324.3 196 79.6
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.0e-86 323.9 201 77.6
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 1.8e-86 323.2 200 78.5
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.8e-86 323.2 204 74.0
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 6.8e-86 321.2 202 76.2
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 8.9e-86 320.9 195 79.0
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 8.9e-86 320.9 198 77.8
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 1.2e-85 320.5 201 75.6
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 1.5e-85 320.1 196 78.1
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 2.0e-85 319.7 201 77.6
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 2.0e-85 319.7 204 73.0
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 5.8e-85 318.2 209 72.2
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 5.8e-85 318.2 200 75.0
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 6.4e-84 314.7 199 74.4
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.1e-83 313.9 202 74.8
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.2e-83 312.4 200 75.5
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 7.0e-83 311.2 227 66.5
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 5.0e-81 305.1 200 73.0
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 5.0e-81 305.1 200 72.5
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 6.6e-81 304.7 202 72.8
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 6.6e-81 304.7 202 72.8
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 3.3e-80 302.4 200 72.0
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.3e-80 301.2 200 71.5
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.1e-79 299.7 183 77.6
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 7.0e-75 284.6 171 78.9
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.1e-74 283.1 203 70.0
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 5.6e-72 275.0 195 66.7
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 2.8e-71 272.7 196 68.4
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 2.6e-69 266.2 165 75.2
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 7.5e-69 264.6 202 62.9
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 4.9e-68 261.9 163 75.5
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 1.4e-67 260.4 205 60.5
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.7e-65 253.4 203 60.1
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 2.5e-64 249.6 201 59.2
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 4.3e-64 248.8 150 78.7
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.6e-63 245.7 206 62.6
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.8e-62 243.4 206 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 6.4e-60 235.0 203 57.6
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.1e-59 234.2 159 67.9
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.2e-59 232.3 195 60.0
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 1.1e-56 224.2 145 74.5
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.1e-54 217.6 134 76.1
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 3.0e-49 199.5 124 75.0
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.3e-47 194.1 145 69.7
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.6e-47 193.7 119 73.9
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 2.1e-47 193.4 119 73.9
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.6e-47 192.6 145 69.7
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 4.2e-43 179.1 168 58.3
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.6e-42 177.2 97 82.5
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 1.7e-36 157.1 158 52.5
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.8e-30 137.1 99 66.7
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 4.0e-30 136.0 204 40.2
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 6.5e-28 128.6 205 42.0
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 6.7e-25 118.6 75 72.0
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 6.7e-25 118.6 75 74.7
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.3e-24 116.3 100 58.0
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 3.1e-22 109.8 60 81.7
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 5.9e-21 105.5 75 69.3
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 8.5e-12 75.1 37 89.2
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 2.0e-08 63.9 47 61.7
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 2.0e-08 63.9 37 78.4
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 4.8e-07 59.3 36 75.0
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.4e-06 57.8 40 70.0


User provided reference genes

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