Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 1.2e-280 969.1 489 100.0
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.1e-209 733.4 502 75.9
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 3.7e-184 648.7 598 60.5
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.8e-178 629.8 504 69.4
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 8.7e-178 627.5 503 68.6
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 3.7e-176 622.1 503 68.6
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 6.9e-175 617.8 507 69.2
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.2e-174 617.1 494 66.2
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.7e-173 613.2 503 67.4
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 5.0e-173 611.7 506 66.6
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 8.5e-173 610.9 505 68.9
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.1e-171 606.3 502 67.3
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.8e-167 593.2 505 67.3
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.2e-166 590.5 504 67.9
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.0e-165 587.4 501 64.7
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.3e-165 587.0 501 66.3
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 7.2e-164 581.3 510 63.7
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 9.7e-161 570.9 500 64.6
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 5.9e-158 561.6 504 61.9
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 6.5e-157 558.1 502 64.3
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 6.5e-157 558.1 506 63.8
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 4.0e-154 548.9 437 65.9
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 9.7e-153 544.3 499 60.5
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 9.7e-153 544.3 501 60.5
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 9.7e-153 544.3 504 60.9
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.8e-151 540.0 500 59.0
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 3.1e-151 539.3 527 61.3
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 4.1e-151 538.9 503 60.2
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 2.2e-149 533.1 488 64.8
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 4.2e-148 528.9 522 60.9
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 8.0e-147 524.6 500 58.4
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 8.8e-146 521.2 485 63.5
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 4.8e-144 515.4 506 58.7
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 4.8e-144 515.4 485 63.5
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.1e-143 514.2 467 62.5
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.6e-142 510.4 490 61.8
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 7.7e-142 508.1 507 58.4
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 6.5e-141 505.0 508 58.5
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 4.7e-139 498.8 500 58.6
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 3.0e-138 496.1 476 61.8
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.0e-138 496.1 476 61.8
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.0e-138 496.1 476 61.8
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.5e-137 493.8 476 61.6
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.3e-136 488.4 476 61.1
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 2.7e-134 483.0 528 57.8
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.8e-133 479.2 446 63.0
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 2.1e-131 473.4 495 56.6
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 3.6e-131 472.6 491 55.4
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 3.0e-130 469.5 491 55.6
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 5.2e-130 468.8 422 60.7
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 7.5e-129 464.9 493 55.8
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.9e-128 463.0 373 67.0
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 1.6e-126 457.2 512 54.1
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 7.8e-126 454.9 490 55.1
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.3e-124 449.5 369 66.4
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.6e-123 447.2 496 55.2
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.8e-122 443.7 490 54.1
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 4.0e-122 442.6 537 51.2
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 6.8e-122 441.8 499 55.3
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.2e-121 441.0 488 54.3
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.2e-118 431.0 502 55.2
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 2.7e-118 429.9 495 53.7
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.5e-118 429.5 373 63.8
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 6.0e-118 428.7 502 52.4
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 8.6e-117 424.9 493 51.7
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 7.3e-116 421.8 402 59.7
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.6e-115 419.5 372 62.6
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 3.6e-115 419.5 492 51.2
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 3.1e-114 416.4 494 53.0
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.2e-113 414.5 491 52.7
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 3.4e-113 412.9 511 53.0
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 2.9e-112 409.8 395 58.5
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 4.9e-112 409.1 492 52.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.9e-111 407.1 490 51.2
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 7.1e-111 405.2 423 57.7
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 9.2e-111 404.8 488 51.0
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 2.7e-110 403.3 493 49.3
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 3.5e-110 402.9 453 53.4
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 1.1e-108 397.9 387 60.2
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.6e-107 394.0 489 48.7
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 8.1e-107 391.7 500 53.0
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 7.6e-105 385.2 369 59.3
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 3.5e-102 376.3 491 49.3
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 5.1e-101 372.5 502 46.8
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 2.5e-100 370.2 422 51.7
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 5.2e-98 362.5 392 55.9
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.3e-96 357.8 491 46.6
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.9e-95 354.0 497 48.9
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 5.1e-93 345.9 505 46.1
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 8.7e-93 345.1 374 53.2
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 3.3e-92 343.2 455 51.6
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 1.3e-91 341.3 376 54.0
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 5.8e-89 332.4 369 53.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 4.2e-87 326.2 376 51.9
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.5e-86 323.2 376 51.3
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 4.6e-86 322.8 374 51.6
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.6e-86 322.8 390 50.3
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.5e-84 317.0 456 46.3
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 5.6e-84 315.8 393 49.9
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.1e-82 311.6 381 50.1
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 5.3e-82 309.3 537 40.8
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 9.0e-82 308.5 377 50.4
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 2.6e-81 307.0 377 50.1
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 3.4e-81 306.6 380 49.7
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 2.9e-80 303.5 491 44.2
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 4.9e-80 302.8 474 43.7
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 8.4e-80 302.0 315 56.2
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.9e-79 300.8 381 49.3
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 8.7e-77 292.0 409 44.5
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 7.4e-76 288.9 377 49.3
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 5.3e-74 282.7 453 43.0
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.5e-73 281.2 443 44.0
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 5.5e-71 272.7 477 40.9
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 2.1e-70 270.8 378 46.3
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 2.1e-70 270.8 391 46.0
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 5.1e-69 266.2 364 48.9
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 5.1e-69 266.2 496 40.1
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 8.2e-67 258.8 472 42.8
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 6.9e-66 255.8 490 41.6
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.3e-60 236.9 243 55.6
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 6.9e-58 229.2 358 43.3
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 4.6e-54 216.5 281 48.8
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 1.0e-48 198.7 205 53.2
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 2.9e-48 197.2 238 45.8
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 3.5e-41 173.7 105 81.0
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.5e-39 168.3 381 34.6
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 2.2e-35 154.5 228 47.4
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 4.1e-34 150.2 130 52.3
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 5.0e-32 143.3 162 53.1
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 6.5e-32 142.9 252 36.9
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 8.5e-32 142.5 248 41.9
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.5e-31 141.7 409 33.7
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 7.2e-31 139.4 221 39.8
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.2e-28 132.1 202 37.6
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 2.2e-27 127.9 383 31.9
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 2.2e-24 117.9 106 47.2
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.8e-24 117.1 119 52.9
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 3.5e-17 94.0 65 70.8
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 7.8e-09 66.2 116 36.2
Oeu020881.1 Olea europaea HOM05D005357 ORTHO05D006354 1.2e-06 58.9 81 51.9


User provided reference genes

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