Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G081300 Manihot esculenta HOM05D007348 ORTHO05D009257 1.1e-69 266.5 133 100.0
Potri.006G087701 Populus trichocarpa HOM05D007348 ORTHO05D009257 8.2e-46 187.2 138 73.9
Sabra06G0067000 Salix brachista HOM05D007348 ORTHO05D009257 7.7e-44 180.6 139 71.9
Cfa017345 Carpinus fangiana HOM05D007348 ORTHO05D009257 3.2e-42 175.3 142 66.9
GSVIVG01034135001 Vitis vinifera HOM05D007348 ORTHO05D009257 3.2e-42 175.3 133 69.9
Ciclev10013090m.g Citrus clementina HOM05D007348 ORTHO05D009257 5.5e-42 174.5 134 68.7
TWI77G0545 Tripterygium wilfordii HOM05D007348 ORTHO05D009257 7.2e-42 174.1 137 70.1
Cc06_g02390 Coffea canephora HOM05D007348 ORTHO05D009257 9.4e-42 173.7 142 67.6
QL07p048913 Quercus lobata HOM05D007348 ORTHO05D009257 2.1e-41 172.6 138 68.1
MD12G1144800 Malus domestica HOM05D007348 ORTHO05D009257 6.1e-41 171.0 93 88.2
CiPaw.09G195200 Carya illinoinensis HOM05D007348 ORTHO05D009257 8.0e-41 170.6 137 70.8
SGA_v2.0_scaffold94G28573 Striga asiatica HOM05D007348 ORTHO05D009257 8.0e-41 170.6 134 71.6
Cpa.g.sc169.14 Carica papaya HOM05D007348 ORTHO05D009257 1.0e-40 170.2 121 76.0
Dinv37151 Davidia involucrata HOM05D007348 ORTHO05D009257 1.8e-40 169.5 145 65.5
Oeu006894.1 Olea europaea HOM05D007348 ORTHO05D009257 1.8e-40 169.5 133 67.7
PGR004G1504 Punica granatum HOM05D007348 ORTHO05D009257 1.8e-40 169.5 139 67.6
COL.COLO4_14769 Corchorus olitorius HOM05D007348 ORTHO05D009257 3.0e-40 168.7 138 68.1
Prupe.6G258300 Prunus persica HOM05D007348 ORTHO05D009257 3.9e-40 168.3 99 84.8
PGSC0003DMG400019150 Solanum tuberosum HOM05D007348 ORTHO05D009257 1.1e-39 166.8 125 68.0
Nitab4.5_0000527g0200 Nicotiana tabacum HOM05D007348 ORTHO05D009257 1.5e-39 166.4 119 72.3
LjContig00141g0000939 Lotus japonicus HOM05D007348 ORTHO05D009257 2.0e-39 166.0 133 65.4
CANSAT35G0511 Cannabis sativa HOM05D007348 ORTHO05D009257 3.3e-39 165.2 140 64.3
CAN.G92.20 Capsicum annuum HOM05D007348 ORTHO05D009257 3.3e-39 165.2 99 83.8
Gorai.006G171200 Gossypium raimondii HOM05D007348 ORTHO05D009257 5.7e-39 164.5 102 81.4
Sc01g0004470 Simmondsia chinensis HOM05D007348 ORTHO05D009257 5.7e-39 164.5 135 69.6
Aqoxy1G00895 Aquilegia oxysepala HOM05D007348 ORTHO05D009257 7.4e-39 164.1 137 64.2
CSS0018490 Camellia sinensis var. sinensis HOM05D007348 ORTHO05D009257 7.4e-39 164.1 144 65.3
ClCG10G021280 Citrullus lanatus HOM05D007348 ORTHO05D009257 9.7e-39 163.7 93 84.9
TAR636G0176 Trochodendron aralioides HOM05D007348 ORTHO05D009257 9.7e-39 163.7 138 68.8
Haze_20824 Corylus avellana HOM05D007348 ORTHO05D009257 1.3e-38 163.3 159 59.1
Lsat_1_v5_gn_9_32101 Lactuca sativa HOM05D007348 ORTHO05D009257 1.3e-38 163.3 136 64.7
MD04G1131700 Malus domestica HOM05D007348 ORTHO05D009257 1.3e-38 163.3 93 83.9
Migut.L01962 Erythranthe guttata HOM05D007348 ORTHO05D009257 1.7e-38 162.9 130 67.7
Eucgr.K03108 Eucalyptus grandis HOM05D007348 ORTHO05D009257 1.7e-38 162.9 93 86.0
Gohir.D09G150000 Gossypium hirsutum HOM05D007348 ORTHO05D009257 1.7e-38 162.9 102 80.4
Migut.J00309 Erythranthe guttata HOM05D007348 ORTHO05D009257 2.2e-38 162.5 140 65.0
Gohir.A09G154300 Gossypium hirsutum HOM05D007348 ORTHO05D009257 2.2e-38 162.5 97 83.5
Nitab4.5_0008097g0010 Nicotiana tabacum HOM05D007348 ORTHO05D009257 2.8e-38 162.2 122 69.7
Sed0022418 Sechium edule HOM05D007348 ORTHO05D009257 2.8e-38 162.2 92 87.0
Thecc.05G036200 Theobroma cacao HOM05D007348 ORTHO05D009257 2.8e-38 162.2 99 81.8
Sopen10g035960 Solanum pennellii HOM05D007348 ORTHO05D009257 3.7e-38 161.8 92 85.9
TAR636G2125 Trochodendron aralioides HOM05D007348 ORTHO05D009257 4.8e-38 161.4 138 68.1
Atru.chr8.2007 Acer truncatum HOM05D007348 ORTHO05D009257 6.3e-38 161.0 95 81.1
unitig_21.g21015 Utricularia gibba HOM05D007348 ORTHO05D009257 1.1e-37 160.2 106 75.5
Peaxi162Scf00330g00089 Petunia axillaris HOM05D007348 ORTHO05D009257 1.4e-37 159.8 121 71.1
vmacro20175 Vaccinium macrocarpon HOM05D007348 ORTHO05D009257 1.4e-37 159.8 133 63.9
ECA247G0870 Erigeron canadensis HOM05D007348 ORTHO05D009257 2.4e-37 159.1 91 84.6
RcHm_v2.0_Chr3g0466241 Rosa chinensis HOM05D007348 ORTHO05D009257 2.4e-37 159.1 105 78.1
Hund09099 Selenicereus undatus HOM05D007348 ORTHO05D009257 2.4e-37 159.1 134 67.2
MELO3C009245.2 Cucumis melo HOM05D007348 ORTHO05D009257 3.1e-37 158.7 95 82.1
FAN05G4426 Fragaria x ananassa HOM05D007348 ORTHO05D009257 3.1e-37 158.7 102 77.5
SEGI_32371 Sequoiadendron giganteum HOM05D007348 ORTHO05D009257 3.1e-37 158.7 103 78.6
HanXRQChr10g0298181 Helianthus annuus HOM05D007348 ORTHO05D009257 4.1e-37 158.3 135 65.9
CsaV3_3G034760 Cucumis sativus L. HOM05D007348 ORTHO05D009257 5.3e-37 157.9 95 82.1
MBI14_g08036_MAGBIO Magnolia biondii HOM05D007348 ORTHO05D009257 5.3e-37 157.9 131 66.4
CDE04G2102 Ceratophyllum demersum HOM05D000082 ORTHO05D001639 7.0e-37 157.5 95 81.1
FvH4_6g13360 Fragaria vesca HOM05D007348 ORTHO05D009257 7.0e-37 157.5 102 76.5
FAN14G5390 Fragaria x ananassa HOM05D007348 ORTHO05D009257 7.0e-37 157.5 102 76.5
Ah.12g059960 Amaranthus hybridus HOM05D007348 ORTHO05D009257 1.2e-36 156.8 133 61.7
ATR0559G267 Amborella trichopoda HOM05D007348 ORTHO05D009257 1.2e-36 156.8 90 85.6
THA.LOC104816258 Tarenaya hassleriana HOM05D007348 ORTHO05D009257 1.6e-36 156.4 92 82.6
FAN09G3409 Fragaria x ananassa HOM05D007348 ORTHO05D009257 2.0e-36 156.0 101 77.2
FAN02G3968 Fragaria x ananassa HOM05D007348 ORTHO05D009257 3.5e-36 155.2 94 79.8
Solyc10g086570.3 Solanum lycopersicum HOM05D007348 ORTHO05D009257 4.5e-36 154.8 126 65.9
Actinidia11269 Actinidia chinensis HOM05D007348 ORTHO05D009257 5.9e-36 154.5 141 61.0
CDE07G1011 Ceratophyllum demersum HOM05D007348 ORTHO05D009257 5.9e-36 154.5 95 78.9
AUR62042385 Chenopodium quinoa HOM05D007348 ORTHO05D009257 7.7e-36 154.1 137 63.5
arahy.Tifrunner.gnm1.ann1.HF038C Arachis hypogaea HOM05D007348 ORTHO05D009257 1.0e-35 153.7 98 78.6
arahy.Tifrunner.gnm1.ann1.IF8W7F Arachis hypogaea HOM05D007348 ORTHO05D009257 1.0e-35 153.7 98 78.6
Phvul.008G118700 Phaseolus vulgaris HOM05D007348 ORTHO05D009257 1.7e-35 152.9 137 60.6
C09p74340 Brassica napus HOM05D007348 ORTHO05D009257 3.8e-35 151.8 93 79.6
BolC9t60168H Brassica oleracea HOM05D007348 ORTHO05D009257 3.8e-35 151.8 93 79.6
Glyma.18G184000 Glycine max HOM05D007348 ORTHO05D009257 3.8e-35 151.8 99 76.8
A10p33440 Brassica napus HOM05D007348 ORTHO05D009257 5.0e-35 151.4 128 61.7
BraA10t45374Z Brassica rapa HOM05D007348 ORTHO05D009257 5.0e-35 151.4 128 61.7
VMungo1383G1736 Vigna mungo HOM05D007348 ORTHO05D009257 1.5e-34 149.8 137 60.6
Lalb_Chr01g0022591 Lupinus albus HOM05D007348 ORTHO05D009257 2.5e-34 149.1 92 78.3
Ca_25900_v3 Cicer arietinum L. HOM05D007348 ORTHO05D009257 3.2e-34 148.7 132 61.4
Zm00001eb355890 Zea mays HOM05D007348 ORTHO05D009257 3.2e-34 148.7 87 82.8
Nn2g13409 Nelumbo nucifera HOM05D007348 ORTHO05D009257 4.2e-34 148.3 146 58.2
Glyma.07G134500 Glycine max HOM05D007348 ORTHO05D009257 5.5e-34 147.9 127 62.2
Aa31LG1G22570 Aethionema arabicum HOM05D007348 ORTHO05D009257 2.1e-33 146.0 125 64.0
EL10As1g23094 Beta vulgaris HOM05D007348 ORTHO05D009257 2.1e-33 146.0 140 59.3
PSO339G0488 Papaver somniferum HOM05D007348 ORTHO05D009257 2.1e-33 146.0 93 76.3
Thhalv10014990m.g Eutrema salsugineum HOM05D007348 ORTHO05D009257 3.6e-33 145.2 83 85.5
PSO063G2704 Papaver somniferum HOM05D007348 ORTHO05D009257 3.6e-33 145.2 104 70.2
Sp6g40280 Schrenkiella parvula HOM05D007348 ORTHO05D009257 6.1e-33 144.4 93 75.3
AT5G02160 Arabidopsis thaliana HOM05D007348 ORTHO05D009257 8.0e-33 144.1 123 61.8
Duzib093G0801 Durio zibethinus HOM05D007348 ORTHO05D009257 8.0e-33 144.1 101 73.3
Os05g0110100 Oryza sativa ssp. japonica HOM05D007348 ORTHO05D009257 8.0e-33 144.1 118 65.3
Psat3g137840 Pisum sativum HOM05D007348 ORTHO05D009257 8.0e-33 144.1 127 55.9
Medtr7g062470 Medicago truncatula HOM05D007348 ORTHO05D009257 2.3e-32 142.5 84 78.6
Carub.0006s0100 Capsella rubella HOM05D007348 ORTHO05D009257 2.0e-31 139.4 82 81.7
HPP92_026789 Vanilla planifolia HOM05D007348 ORTHO05D009257 2.0e-31 139.4 84 81.0
Duzib106G1977 Durio zibethinus HOM05D007348 ORTHO05D009257 2.6e-31 139.0 129 60.5
Pp3c13_7350 Physcomitrium patens HOM05D007348 ORTHO05D009257 2.6e-31 139.0 88 77.3
Pp3c3_5420 Physcomitrium patens HOM05D007348 ORTHO05D009257 3.4e-31 138.7 84 76.2
AL6G11390 Arabidopsis lyrata HOM05D007348 ORTHO05D009257 7.5e-31 137.5 82 80.5
CARHR211200 Cardamine hirsuta HOM05D007348 ORTHO05D009257 4.1e-29 131.7 92 69.6
Mapoly0046s0114 Marchantia polymorpha HOM05D007348 ORTHO05D009257 1.6e-28 129.8 85 75.3
SMO174G0219 Selaginella moellendorffii HOM05D007348 ORTHO05D009257 2.0e-28 129.4 88 68.2
CBR_g52180 Chara braunii HOM05D007348 ORTHO05D009257 2.7e-25 119.0 89 67.4
CANSAT35G1486 Cannabis sativa HOM05D007348 ORTHO05D009257 1.5e-23 113.2 115 54.8
HPP92_000744 Vanilla planifolia HOM05D007348 ORTHO05D009257 3.0e-16 89.0 84 57.1
TPR.G27019 Trifolium pratense HOM05D007348 ORTHO05D009257 1.2e-15 87.0 46 82.6
AagrBONN_evm.TU.Sc2ySwM_117.386 Anthoceros agrestis HOM05D007348 ORTHO05D009257 1.2e-09 67.0 94 46.8
TPR.G1710 Trifolium pratense HOM05D007348 ORTHO05D009257 1.8e-08 63.2 45 66.7


User provided reference genes

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