Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 2.2e-48 195.3 98 100.0
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 8.8e-37 156.8 98 82.7
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.4e-34 149.4 98 79.6
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 5.5e-31 137.5 101 73.3
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.8e-29 132.5 99 72.7
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 7.4e-28 127.1 99 63.6
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 7.4e-28 127.1 99 63.6
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.8e-27 125.2 102 62.7
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.1e-26 121.7 98 65.3
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 5.9e-25 117.5 86 67.4
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 5.9e-25 117.5 99 61.6
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.5e-24 113.6 104 65.4
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 1.2e-22 109.8 96 60.4
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 1.2e-22 109.8 104 63.5
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 1.6e-22 109.4 94 59.6
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.1e-22 109.0 97 61.9
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.1e-22 109.0 99 59.6
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 2.7e-22 108.6 98 59.2
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 2.7e-22 108.6 99 56.6
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 4.7e-22 107.8 100 58.0
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 4.7e-22 107.8 95 57.9
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 8.0e-22 107.1 103 57.3
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.4e-21 106.3 95 60.0
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 4.0e-21 104.8 90 64.4
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 4.0e-21 104.8 105 61.9
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 6.7e-21 104.0 99 57.6
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 8.8e-21 103.6 95 57.9
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.5e-20 102.8 100 56.0
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 1.5e-20 102.8 86 58.1
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.6e-20 102.1 106 58.5
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.3e-19 99.8 91 59.3
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.3e-19 99.8 99 57.6
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 2.8e-19 98.6 98 57.1
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.8e-19 98.6 98 53.1
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 3.7e-19 98.2 100 52.0
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 3.7e-19 98.2 98 54.1
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 4.8e-19 97.8 100 54.0
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 6.3e-19 97.4 100 58.0
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 3.1e-18 95.1 69 68.1
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 3.1e-18 95.1 90 56.7
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 9.1e-18 93.6 100 58.0
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 9.1e-18 93.6 91 56.0
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.2e-17 93.2 99 54.5
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 2.6e-17 92.0 98 52.0
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 4.5e-17 91.3 100 56.0
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 1.0e-16 90.1 98 49.0
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.3e-16 89.7 91 49.5
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 1.3e-16 89.7 100 59.0
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 3.8e-16 88.2 98 56.1
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 5.0e-16 87.8 98 52.0
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.0e-16 87.8 99 52.5
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 6.5e-16 87.4 99 54.5
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 6.5e-16 87.4 95 51.6
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.5e-16 87.0 103 51.5
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 8.5e-16 87.0 103 51.5
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 8.5e-16 87.0 90 50.0
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 3.2e-15 85.1 91 54.9
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 5.5e-15 84.3 99 50.5
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 7.2e-15 84.0 94 51.1
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 9.4e-15 83.6 91 47.3
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.6e-14 82.8 95 48.4
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 3.6e-14 81.6 92 47.8
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 8.0e-14 80.5 67 61.2
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.4e-13 79.7 103 50.5
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 4.0e-13 78.2 86 51.2
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 6.8e-13 77.4 91 49.5
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 6.8e-13 77.4 86 51.2
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 1.2e-12 76.6 47 76.6
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 3.4e-12 75.1 102 47.1
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 5.7e-12 74.3 88 46.6
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 2.2e-11 72.4 98 43.9
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 2.8e-11 72.0 97 52.6
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 6.3e-11 70.9 93 47.3
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.1e-10 70.1 91 46.2
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 1.1e-10 70.1 93 47.3
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 1.4e-10 69.7 90 45.6
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 2.4e-10 68.9 93 47.3
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 5.4e-10 67.8 97 42.3
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 1.6e-09 66.2 89 41.6
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 1.6e-09 66.2 89 46.1
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.0e-09 65.9 89 43.8
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 2.7e-09 65.5 97 40.2
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 7.7e-09 63.9 47 57.4
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 2.2e-08 62.4 89 39.3
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 2.2e-08 62.4 46 65.2
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 2.9e-08 62.0 89 42.7
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 3.8e-08 61.6 89 41.6
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 3.8e-08 61.6 95 43.2
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 5.0e-08 61.2 89 38.2
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 5.0e-08 61.2 89 38.2
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 6.5e-08 60.8 86 39.5
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 1.1e-07 60.1 89 42.7
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 1.1e-07 60.1 89 42.7
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 1.5e-07 59.7 89 42.7
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 1.9e-07 59.3 102 41.2
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 3.2e-07 58.5 74 52.7
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 4.2e-07 58.2 89 39.3
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 4.2e-07 58.2 96 40.6
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 7.2e-07 57.4 74 51.4
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 1.2e-06 56.6 68 42.6
SHI12715 Sapria himalayana HOM05D007574 ORTHO05D007552 1.6e-06 56.2 51 56.9
A10p33500 Brassica napus HOM05D009057 ORTHO05D011698 2.1e-06 55.8 73 50.7
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 2.1e-06 55.8 75 48.0
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 2.1e-06 55.8 64 54.7
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 2.7e-06 55.5 86 38.4
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 2.7e-06 55.5 86 38.4
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 3.6e-06 55.1 89 39.3
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 4.7e-06 54.7 89 37.1
Os01g0847100 Oryza sativa ssp. japonica HOM05D042109 ORTHO05D037005 4.7e-06 54.7 50 50.0
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 6.1e-06 54.3 89 41.6
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 6.1e-06 54.3 89 39.3
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 6.1e-06 54.3 89 39.3
Os01g0143900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 6.1e-06 54.3 64 46.9
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 8.0e-06 53.9 73 46.6


User provided reference genes

Program Settings