Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 3.5e-208 728.0 364 100.0
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 3.6e-176 621.7 364 83.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 8.8e-175 617.1 364 81.6
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 9.1e-172 607.1 364 79.9
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.3e-170 603.2 361 79.2
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 6.1e-168 594.3 361 78.9
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.2e-167 591.3 367 77.7
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.8e-165 585.5 364 79.1
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.7e-165 585.1 362 75.7
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.8e-165 584.7 362 75.7
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-164 583.2 362 75.4
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.6e-163 579.7 419 70.2
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.2e-162 575.9 364 76.6
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.5e-161 572.4 358 77.9
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.2e-160 570.1 361 74.8
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.7e-160 568.9 363 75.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.4e-159 566.6 372 74.2
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 8.8e-159 563.9 357 77.6
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 4.4e-158 561.6 362 76.5
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 5.7e-158 561.2 362 74.6
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 9.8e-158 560.5 364 72.8
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 9.8e-158 560.5 364 74.7
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.7e-157 559.7 372 71.0
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.2e-157 559.3 364 73.9
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.7e-157 558.5 364 72.5
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 3.7e-157 558.5 364 73.6
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.8e-156 556.2 363 73.8
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 2.4e-156 555.8 364 73.4
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 2.4e-156 555.8 362 74.0
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 4.1e-156 555.1 364 75.0
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 4.1e-156 555.1 372 71.0
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 7.0e-156 554.3 363 74.1
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 9.1e-156 553.9 361 73.7
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 9.1e-156 553.9 363 73.8
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.6e-155 553.1 361 74.8
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 3.5e-155 552.0 364 72.8
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 3.5e-155 552.0 376 70.5
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 4.5e-155 551.6 364 73.1
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 4.5e-155 551.6 364 72.8
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 5.9e-155 551.2 363 74.1
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.0e-154 550.4 369 74.5
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.3e-154 550.1 364 73.1
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.9e-154 548.9 365 73.4
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 3.8e-154 548.5 363 72.7
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 6.6e-154 547.7 364 72.3
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 8.6e-154 547.4 363 73.6
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.5e-153 546.6 363 73.3
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.3e-153 545.4 362 71.0
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 9.5e-153 543.9 363 73.3
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 9.5e-153 543.9 362 70.4
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.2e-152 543.5 362 70.4
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.6e-152 543.1 362 73.5
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-152 543.1 363 72.5
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.6e-152 543.1 363 73.6
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.6e-152 543.1 363 73.0
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.1e-152 542.7 363 72.2
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 2.8e-152 542.3 363 72.7
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 8.0e-152 540.8 393 68.4
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.0e-151 540.4 363 72.7
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.0e-151 540.4 369 70.2
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 1.4e-151 540.0 363 71.1
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 1.4e-151 540.0 356 73.0
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 2.6e-150 535.8 361 71.2
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.6e-150 535.8 381 68.8
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 2.2e-149 532.7 362 70.4
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 4.9e-149 531.6 357 72.0
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.1e-148 530.4 353 73.9
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.1e-148 530.4 353 73.9
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.8e-148 529.6 363 71.6
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 3.1e-148 528.9 350 74.0
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.4e-148 528.1 389 66.1
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.0e-148 527.7 396 65.7
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 9.2e-148 527.3 366 70.2
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.7e-147 525.8 389 65.8
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.5e-147 525.4 363 69.7
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.5e-147 525.0 389 65.6
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.1e-145 520.4 363 71.1
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 7.3e-145 517.7 350 72.6
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 9.5e-145 517.3 397 65.2
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.2e-144 516.9 322 77.0
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.2e-144 516.9 366 70.5
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.6e-144 516.5 359 67.7
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 2.3e-143 512.7 362 68.8
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.3e-143 512.7 364 69.5
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.5e-142 510.0 362 68.0
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.0e-142 509.6 350 71.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 5.8e-142 508.1 363 68.0
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.4e-140 503.4 361 66.5
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.3e-137 492.3 364 67.9
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-136 490.3 315 74.3
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.6e-136 490.0 362 68.0
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.6e-136 490.0 362 68.0
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 6.2e-136 488.0 322 73.0
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.1e-135 485.7 364 64.6
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 6.8e-135 484.6 318 71.4
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.5e-134 483.4 364 64.6
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.3e-133 480.3 378 64.6
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 3.7e-133 478.8 356 64.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.4e-132 476.1 366 64.2
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.7e-131 472.6 364 65.1
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 4.6e-131 471.9 298 76.5
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 4.3e-129 465.3 357 63.3
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 6.2e-128 461.5 298 77.5
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.8e-126 454.9 354 63.6
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.1e-124 450.7 298 72.1
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 3.0e-122 442.6 292 71.9
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.1e-121 440.7 298 72.5
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.2e-120 434.9 389 58.4
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.6e-118 429.5 328 66.2
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.1e-114 415.2 287 69.0
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.6e-112 410.2 364 59.6
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 4.2e-108 395.6 367 56.9
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.6e-106 388.3 364 58.0
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 4.3e-105 385.6 362 56.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 3.6e-104 382.5 286 63.3
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 4.8e-104 382.1 364 55.5
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.2e-101 373.2 362 50.8
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.3e-98 364.0 350 51.7
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.9e-97 360.1 358 55.6
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.3e-96 357.5 342 51.2
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.3e-96 357.5 268 67.5
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 4.2e-92 342.4 314 52.2
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 3.5e-91 339.3 337 48.4
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 3.8e-61 239.6 152 73.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 4.2e-60 236.1 328 39.3
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 8.0e-51 205.3 135 71.9
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 3.2e-44 183.3 379 30.9
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.6e-41 173.7 162 58.6
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-40 170.6 140 60.0
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 4.2e-36 156.4 337 33.5
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 8.9e-34 148.7 199 42.7
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.9e-32 142.9 103 68.9
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.8e-31 141.0 138 53.6
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 9.2e-31 138.7 116 61.2
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.8e-30 135.6 85 70.6
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.8e-30 135.6 87 70.1
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.0e-29 135.2 85 70.6
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.9e-28 131.0 83 71.1
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 7.5e-25 119.0 91 65.9
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-24 117.5 79 67.1
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.3e-24 115.5 78 66.7
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.3e-24 115.5 78 66.7
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-23 114.8 79 65.8
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.4e-23 114.0 78 65.4
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-23 113.6 78 65.4
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.4e-23 112.8 78 65.4
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.4e-23 112.8 79 64.6
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.0e-23 112.5 351 26.2
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.2e-23 112.1 78 65.4
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 2.0e-22 110.9 110 51.8
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 6.0e-22 109.4 110 51.8
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.3e-21 108.2 104 59.6
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-21 108.2 79 62.0
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.6e-21 105.5 68 67.6
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.9e-20 104.4 101 52.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.0e-18 96.7 76 63.2
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.4e-15 88.2 67 71.6
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 7.1e-15 85.9 45 88.9
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 9.2e-15 85.5 60 68.3
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-14 85.1 56 71.4
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-13 80.9 89 49.4
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 8.9e-10 68.9 52 59.6
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-09 67.8 43 74.4
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 9.9e-09 65.5 48 62.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.3e-08 65.1 43 69.8
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 6.4e-08 62.8 42 66.7
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-06 58.2 42 59.5
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.6e-06 58.2 49 49.0
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 2.1e-06 57.8 60 55.0
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 2.1e-06 57.8 60 55.0
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.5e-06 57.0 49 49.0
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 3.5e-06 57.0 49 49.0
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 4.6e-06 56.6 43 60.5
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.0e-06 56.2 37 56.8
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.0e-06 56.2 37 56.8
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 7.8e-06 55.8 49 46.9


User provided reference genes

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