Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.8e-126 454.5 231 100.0
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 2.9e-46 189.5 239 51.9
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.1e-45 187.6 233 54.5
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.3e-38 164.1 240 51.7
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.9e-37 160.2 233 49.8
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 2.1e-36 156.8 264 44.3
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 7.1e-29 131.7 235 45.1
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 4.6e-28 129.0 177 49.7
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 1.0e-27 127.9 240 41.2
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 1.0e-27 127.9 216 45.4
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 6.7e-27 125.2 223 44.8
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 1.5e-26 124.0 171 48.5
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 1.3e-25 120.9 171 49.7
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.6e-25 120.6 228 40.4
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.6e-25 120.6 235 42.6
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 2.1e-25 120.2 223 43.0
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.8e-25 119.8 216 43.1
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 3.7e-25 119.4 213 43.2
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 1.1e-24 117.9 251 38.6
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 1.4e-24 117.5 162 47.5
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 2.4e-24 116.7 222 41.0
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 6.9e-24 115.2 144 51.4
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 2.6e-23 113.2 139 51.8
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 5.8e-23 112.1 206 42.7
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 7.6e-23 111.7 186 45.2
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 1.3e-22 110.9 244 37.7
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.2e-22 110.2 213 39.0
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 2.2e-22 110.2 242 38.0
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 6.4e-22 108.6 216 39.8
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.1e-21 107.8 216 39.8
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.9e-21 107.1 143 47.6
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 4.2e-21 105.9 263 35.4
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 7.1e-21 105.1 219 40.2
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 4.6e-20 102.4 231 41.1
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 6.0e-20 102.1 149 47.0
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 7.9e-20 101.7 145 46.9
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.3e-19 100.9 159 44.7
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.3e-19 100.1 227 38.8
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 3.0e-19 99.8 258 36.8
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 3.9e-19 99.4 142 50.0
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 6.7e-19 98.6 146 45.2
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 6.7e-19 98.6 257 34.2
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 2.5e-18 96.7 149 44.3
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 2.5e-18 96.7 262 37.8
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 4.3e-18 95.9 224 38.4
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 5.6e-18 95.5 266 32.7
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 7.4e-18 95.1 223 37.2
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 9.6e-18 94.7 142 47.2
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 1.6e-17 94.0 144 50.0
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 1.6e-17 94.0 254 35.4
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 1.6e-17 94.0 262 34.0
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 2.1e-17 93.6 149 43.6
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 3.7e-17 92.8 133 45.9
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.8e-17 92.4 147 45.6
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.4e-16 90.9 135 43.7
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 1.8e-16 90.5 237 33.8
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 1.8e-16 90.5 215 37.7
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 1.8e-16 90.5 149 39.6
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.8e-16 90.5 255 31.0
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.8e-16 90.5 253 31.2
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 1.8e-16 90.5 144 43.8
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.1e-16 89.7 261 33.7
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 4.0e-16 89.4 237 33.8
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 6.9e-16 88.6 172 41.9
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 6.9e-16 88.6 172 41.9
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 9.0e-16 88.2 138 45.7
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 1.2e-15 87.8 253 33.6
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.6e-15 86.7 239 35.6
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 4.5e-15 85.9 141 41.8
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 4.5e-15 85.9 141 41.8
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 5.8e-15 85.5 179 40.8
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 7.6e-15 85.1 135 43.7
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.0e-14 84.7 227 34.8
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.7e-14 84.0 257 32.3
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 2.9e-14 83.2 151 45.7
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 3.8e-14 82.8 251 32.3
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 1.1e-13 81.3 243 32.5
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.1e-13 81.3 118 47.5
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.1e-13 81.3 144 43.8
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 1.4e-13 80.9 141 43.3
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 1.9e-13 80.5 254 28.3
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 2.5e-13 80.1 130 42.3
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 5.5e-13 79.0 249 32.9
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 1.2e-12 77.8 136 43.4
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.2e-12 77.8 160 38.8
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 1.2e-12 77.8 253 28.5
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 2.1e-12 77.0 145 42.1
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 2.1e-12 77.0 228 34.6
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 2.1e-12 77.0 265 30.9
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 2.7e-12 76.6 139 45.3
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 3.5e-12 76.3 139 42.4
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 4.6e-12 75.9 140 43.6
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 6.0e-12 75.5 226 32.7
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 7.9e-12 75.1 154 42.9
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 1.0e-11 74.7 252 31.7
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.0e-11 74.7 243 30.9
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 3.0e-11 73.2 117 47.0
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 3.0e-11 73.2 140 40.7
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 3.9e-11 72.8 145 42.8
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 6.7e-11 72.0 84 63.1
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 6.7e-11 72.0 177 35.0
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.5e-10 70.9 174 35.6
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.5e-10 70.1 175 35.4
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 3.3e-10 69.7 147 40.1
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 4.3e-10 69.3 130 38.5
unitig_578.g15702 Utricularia gibba HOM05D004206 ORTHO05D003325 4.3e-10 69.3 94 42.6
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 5.7e-10 68.9 144 41.7
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 5.7e-10 68.9 198 33.8
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 7.4e-10 68.6 147 42.9
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 1.3e-09 67.8 149 36.9
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 1.3e-09 67.8 154 40.9
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.6e-09 67.4 164 36.6
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 1.6e-09 67.4 143 39.9
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 1.6e-09 67.4 130 38.5
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 2.2e-09 67.0 99 47.5
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 3.7e-09 66.2 149 37.6
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.7e-09 66.2 140 36.4
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 4.8e-09 65.9 153 34.0
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 4.8e-09 65.9 147 39.5
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 1.1e-08 64.7 134 34.3
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 1.1e-08 64.7 134 34.3
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 1.1e-08 64.7 140 35.7
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 2.4e-08 63.5 130 33.8
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 2.4e-08 63.5 154 40.3
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 3.1e-08 63.2 88 46.6
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 3.1e-08 63.2 143 36.4
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 3.1e-08 63.2 228 29.4
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.1e-08 62.8 139 35.3
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 4.1e-08 62.8 129 34.9
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 4.1e-08 62.8 114 39.5
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 5.3e-08 62.4 147 39.5
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 6.9e-08 62.0 82 46.3
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 6.9e-08 62.0 234 32.5
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 6.9e-08 62.0 92 53.3
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 6.9e-08 62.0 137 35.8
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 9.0e-08 61.6 137 35.8
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 1.2e-07 61.2 144 34.7
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 1.2e-07 61.2 148 37.8
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 1.5e-07 60.8 166 36.7
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 1.5e-07 60.8 152 32.2
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 2.0e-07 60.5 142 33.1
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 2.6e-07 60.1 244 27.5
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 2.6e-07 60.1 162 34.6
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 5.9e-07 58.9 167 34.1
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 5.9e-07 58.9 167 34.1
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 5.9e-07 58.9 167 34.1
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 5.9e-07 58.9 183 35.5
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 1.0e-06 58.2 137 35.8
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.0e-06 58.2 163 31.9
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 1.3e-06 57.8 152 34.9
CARHR163580 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.3e-06 57.8 61 45.9
Rhsim13G0085900 Rhododendron simsii HOM05D004206 ORTHO05D003325 1.3e-06 57.8 44 61.4
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 1.7e-06 57.4 133 36.8
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 1.7e-06 57.4 141 34.0
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.2e-06 57.0 83 48.2
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 2.9e-06 56.6 89 39.3
BcaB02g07768 Brassica carinata HOM05D008508 ORTHO05D003325 2.9e-06 56.6 64 51.6
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 3.8e-06 56.2 132 34.1
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 3.8e-06 56.2 167 31.1
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 3.8e-06 56.2 132 36.4
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 3.8e-06 56.2 49 63.3
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 3.8e-06 56.2 123 42.3
Os01g0814400 Oryza sativa ssp. japonica HOM05D033995 ORTHO05D003325 5.0e-06 55.8 58 60.3
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 5.0e-06 55.8 142 34.5
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 5.0e-06 55.8 139 36.0
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 5.0e-06 55.8 84 46.4
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 6.5e-06 55.5 52 59.6
THA.LOC104824529 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 6.5e-06 55.5 114 39.5
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 8.5e-06 55.1 74 48.6
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 8.5e-06 55.1 74 48.6
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 8.5e-06 55.1 64 51.6
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 8.5e-06 55.1 48 58.3
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 8.5e-06 55.1 135 31.1
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 8.5e-06 55.1 117 36.8


User provided reference genes

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