Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G075937 Manihot esculenta HOM05D000257 ORTHO05D026578 2.2e-48 195.3 97 100.0
Manes.18G099000 Manihot esculenta HOM05D000257 ORTHO05D004041 1.8e-29 132.5 82 80.5
Sabra13G0097800 Salix brachista HOM05D000257 ORTHO05D004041 2.3e-21 105.5 67 73.1
Potri.013G115500 Populus trichocarpa HOM05D000257 ORTHO05D004041 6.7e-21 104.0 67 71.6
Peaxi162Scf00495g00042 Petunia axillaris HOM05D000257 ORTHO05D004041 4.8e-19 97.8 64 70.3
Nitab4.5_0003518g0060 Nicotiana tabacum HOM05D000257 ORTHO05D004041 6.2e-19 97.4 76 61.8
Solyc06g034230.2 Solanum lycopersicum HOM05D000257 ORTHO05D026578 1.4e-18 96.3 64 70.3
Sopen06g010880 Solanum pennellii HOM05D000257 ORTHO05D004041 1.4e-18 96.3 64 70.3
PGSC0003DMG400021581 Solanum tuberosum HOM05D000257 ORTHO05D004041 5.3e-18 94.4 76 61.8
Nitab4.5_0000159g0050 Nicotiana tabacum HOM05D000257 ORTHO05D004041 6.9e-18 94.0 76 60.5
Cpa.g.sc66.106 Carica papaya HOM05D000257 ORTHO05D004041 1.2e-17 93.2 89 58.4
AT1G71850 Arabidopsis thaliana HOM05D000257 ORTHO05D004041 2.6e-17 92.0 88 54.5
Haze_17896 Corylus avellana HOM05D000257 ORTHO05D004041 2.6e-17 92.0 68 61.8
Carub.0002s1861 Capsella rubella HOM05D000257 ORTHO05D004041 4.5e-17 91.3 87 56.3
CAN.G459.37 Capsicum annuum HOM05D000257 ORTHO05D004041 5.8e-17 90.9 66 68.2
Sp5g26930 Schrenkiella parvula HOM05D000257 ORTHO05D004041 5.8e-17 90.9 86 57.0
SpUn0020_0050 Schrenkiella parvula HOM05D000257 ORTHO05D004041 5.8e-17 90.9 86 57.0
Ciclev10003568m.g Citrus clementina HOM05D000257 ORTHO05D004041 7.6e-17 90.5 63 66.7
Gohir.A08G017000 Gossypium hirsutum HOM05D000257 ORTHO05D004041 7.6e-17 90.5 74 63.5
Gorai.004G024300 Gossypium raimondii HOM05D000257 ORTHO05D004041 7.6e-17 90.5 74 62.2
Cfa018210 Carpinus fangiana HOM05D000257 ORTHO05D004041 1.3e-16 89.7 68 60.3
FvH4_4g08630 Fragaria vesca HOM05D000257 ORTHO05D004041 1.7e-16 89.4 82 52.4
FAN12G1794 Fragaria x ananassa HOM05D000257 ORTHO05D004041 1.7e-16 89.4 82 52.4
CANSAT64G1425 Cannabis sativa HOM05D000257 ORTHO05D004041 2.2e-16 89.0 84 51.2
Thecc.09G197100 Theobroma cacao HOM05D000257 ORTHO05D004041 2.2e-16 89.0 68 64.7
Thhalv10018458m.g Eutrema salsugineum HOM05D000257 ORTHO05D004041 4.9e-16 87.8 86 54.7
AL2G31430 Arabidopsis lyrata HOM05D000257 ORTHO05D004041 6.5e-16 87.4 87 54.0
FAN22G1606 Fragaria x ananassa HOM05D000257 ORTHO05D004041 6.5e-16 87.4 76 53.9
Gohir.D08G027400 Gossypium hirsutum HOM05D000257 ORTHO05D004041 6.5e-16 87.4 74 60.8
Aa31LG4G8750 Aethionema arabicum HOM05D000257 ORTHO05D004041 1.1e-15 86.7 78 60.3
Prupe.8G052100 Prunus persica HOM05D000257 ORTHO05D004041 1.1e-15 86.7 71 59.2
Atru.chr13.1855 Acer truncatum HOM05D000257 ORTHO05D004041 1.4e-15 86.3 67 62.7
BcaC08g46621 Brassica carinata HOM05D000257 ORTHO05D004041 1.4e-15 86.3 86 52.3
C06p45940 Brassica napus HOM05D000257 ORTHO05D004041 1.4e-15 86.3 86 52.3
BolC6t39647H Brassica oleracea HOM05D000257 ORTHO05D004041 1.4e-15 86.3 86 52.3
BraA07t31368Z Brassica rapa HOM05D000257 ORTHO05D004041 1.4e-15 86.3 86 52.3
RcHm_v2.0_Chr4g0405141 Rosa chinensis HOM05D000257 ORTHO05D004041 1.4e-15 86.3 85 52.9
A07p38030 Brassica napus HOM05D000257 ORTHO05D004041 2.5e-15 85.5 86 52.3
Cc10_g09680 Coffea canephora HOM05D000257 ORTHO05D004041 2.5e-15 85.5 60 66.7
MD10G1045200 Malus domestica HOM05D000257 ORTHO05D004041 2.5e-15 85.5 70 58.6
PGR042G2038 Punica granatum HOM05D000257 ORTHO05D004041 2.5e-15 85.5 62 61.3
arahy.Tifrunner.gnm1.ann1.AI28X3 Arachis hypogaea HOM05D000257 ORTHO05D004041 3.2e-15 85.1 58 65.5
arahy.Tifrunner.gnm1.ann1.CJKV8P Arachis hypogaea HOM05D000257 ORTHO05D004041 3.2e-15 85.1 58 65.5
arahy.Tifrunner.gnm1.ann1.VEYK2F Arachis hypogaea HOM05D000257 ORTHO05D004041 3.2e-15 85.1 58 65.5
COL.COLO4_23406 Corchorus olitorius HOM05D000257 ORTHO05D004041 3.2e-15 85.1 60 65.0
arahy.Tifrunner.gnm1.ann1.H3QVZA Arachis hypogaea HOM05D000257 ORTHO05D004041 5.5e-15 84.3 58 62.1
CARHR290930 Cardamine hirsuta HOM05D000257 ORTHO05D004041 1.2e-14 83.2 57 68.4
Dinv41679 Davidia involucrata HOM05D000257 ORTHO05D004041 1.2e-14 83.2 64 59.4
Hma1.2p1_0911F.1_g235880 Hydrangea macrophylla HOM05D000257 ORTHO05D004041 2.1e-14 82.4 72 54.2
QL02p034287 Quercus lobata HOM05D000257 ORTHO05D004041 3.5e-14 81.6 57 63.2
QL02p034310 Quercus lobata HOM05D000257 ORTHO05D004041 3.5e-14 81.6 57 63.2
SGA_v2.0_scaffold10G05390 Striga asiatica HOM05D000257 ORTHO05D004041 4.6e-14 81.3 81 53.1
Lj7P302T19 Lonicera japonica HOM05D000257 ORTHO05D004041 6.0e-14 80.9 68 55.9
CiPaw.16G005000 Carya illinoinensis HOM05D000257 ORTHO05D004041 7.9e-14 80.5 83 49.4
Oeu052425.1 Olea europaea HOM05D000257 ORTHO05D004041 1.0e-13 80.1 60 63.3
MSTRG.1499 Avicennia marina HOM05D000257 ORTHO05D004041 2.3e-13 79.0 69 59.4
Nn5g27831 Nelumbo nucifera HOM05D000257 ORTHO05D004041 2.3e-13 79.0 69 59.4
SHI09044 Sapria himalayana HOM05D000257 ORTHO05D004041 2.3e-13 79.0 74 54.1
HanXRQChr04g0109471 Helianthus annuus HOM05D000257 ORTHO05D004041 5.1e-13 77.8 60 58.3
CsaV3_5G024080 Cucumis sativus L. HOM05D000257 ORTHO05D004041 6.7e-13 77.4 67 56.7
Rhsim06G0099400 Rhododendron simsii HOM05D000257 ORTHO05D004041 6.7e-13 77.4 67 52.2
TAR628G1380 Trochodendron aralioides HOM05D000257 ORTHO05D004041 8.7e-13 77.0 64 62.5
SalBow7G0644 Salvia bowleyana HOM05D000257 ORTHO05D004041 1.1e-12 76.6 60 61.7
Sed0024603 Sechium edule HOM05D000257 ORTHO05D004041 1.1e-12 76.6 67 56.7
Lalb_Chr01g0009951 Lupinus albus HOM05D000257 ORTHO05D004041 1.9e-12 75.9 68 51.5
Sc23g0001080 Simmondsia chinensis HOM05D000257 ORTHO05D004041 1.9e-12 75.9 66 54.5
EL10Ac1g00061 Beta vulgaris HOM05D000257 ORTHO05D004041 2.5e-12 75.5 66 57.6
MELO3C012640.2 Cucumis melo HOM05D000257 ORTHO05D004041 3.3e-12 75.1 71 52.1
unitig_747.g21463 Utricularia gibba HOM05D000257 ORTHO05D026578 3.3e-12 75.1 60 56.7
TAR381G1076 Trochodendron aralioides HOM05D000257 ORTHO05D004041 4.3e-12 74.7 85 47.1
DCAR_023110 Daucus carota HOM05D000257 ORTHO05D004041 1.3e-11 73.2 64 54.7
Eucgr.F02634 Eucalyptus grandis HOM05D000257 ORTHO05D004041 2.8e-11 72.0 55 60.0
Glyma.16G157200 Glycine max HOM05D000257 ORTHO05D004041 8.2e-11 70.5 71 53.5
PSO170G3541 Papaver somniferum HOM05D000257 ORTHO05D004041 8.2e-11 70.5 64 54.7
PSO357G0217 Papaver somniferum HOM05D000257 ORTHO05D004041 8.2e-11 70.5 64 54.7
TPR.G15341 Trifolium pratense HOM05D000765 ORTHO05D004041 8.2e-11 70.5 55 58.2
Migut.C01227 Erythranthe guttata HOM05D000257 ORTHO05D004041 1.1e-10 70.1 54 59.3
VMungo0464G0926 Vigna mungo HOM05D000257 ORTHO05D004041 1.1e-10 70.1 68 52.9
Phvul.004G085600 Phaseolus vulgaris HOM05D000257 ORTHO05D004041 1.4e-10 69.7 68 52.9
Lj2g0017076 Lotus japonicus HOM05D000257 ORTHO05D004041 1.8e-10 69.3 55 60.0
Psat0s743g0040 Pisum sativum HOM05D000257 ORTHO05D004041 1.8e-10 69.3 55 58.2
Glyma.02G075200 Glycine max HOM05D000257 ORTHO05D004041 2.4e-10 68.9 58 56.9
MBI02_g15147_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D004041 3.1e-10 68.6 64 51.6
Ca_27124_v3 Cicer arietinum L. HOM05D000257 ORTHO05D004041 4.1e-10 68.2 55 60.0
ECA240G2565 Erigeron canadensis HOM05D000257 ORTHO05D004041 9.0e-10 67.0 72 50.0
AUR62004669 Chenopodium quinoa HOM05D000257 ORTHO05D004041 2.0e-09 65.9 81 44.4
Medtr6g043850 Medicago truncatula HOM05D000257 ORTHO05D004041 3.4e-09 65.1 68 50.0
AUR62023588 Chenopodium quinoa HOM05D000257 ORTHO05D004041 2.2e-08 62.4 53 56.6
ATR0965G001 Amborella trichopoda HOM05D000257 ORTHO05D004041 2.9e-08 62.0 55 47.3
CDE02G4415 Ceratophyllum demersum HOM05D001117 ORTHO05D000930 3.8e-08 61.6 58 46.6
ATR0763G094 Amborella trichopoda HOM05D000257 ORTHO05D004041 8.5e-08 60.5 58 46.6
Dinv07477 Davidia involucrata HOM05D000257 ORTHO05D004041 1.1e-07 60.1 83 39.8
ATR0763G284 Amborella trichopoda HOM05D000257 ORTHO05D026578 1.4e-07 59.7 55 45.5
Nitab4.5_0000948g0020 Nicotiana tabacum HOM05D000257 ORTHO05D004041 1.4e-07 59.7 87 44.8
FAN07G1042 Fragaria x ananassa HOM05D000257 ORTHO05D004041 1.9e-07 59.3 47 57.4
SGA_v2.0_scaffold272G46376 Striga asiatica HOM05D000257 ORTHO05D004041 9.3e-07 57.0 68 45.6
Actinidia00181 Actinidia chinensis HOM05D000257 ORTHO05D004041 1.2e-06 56.6 66 48.5
CDE05G1089 Ceratophyllum demersum HOM05D000257 ORTHO05D004041 1.2e-06 56.6 60 45.0
ClCG10G007010 Citrullus lanatus HOM05D000257 ORTHO05D004041 1.2e-06 56.6 74 44.6
Cc02_g23050 Coffea canephora HOM05D000257 ORTHO05D004041 1.6e-06 56.2 70 45.7
CAN.G798.62 Capsicum annuum HOM05D000257 ORTHO05D004041 2.1e-06 55.8 66 45.5
Migut.B00782 Erythranthe guttata HOM05D000257 ORTHO05D004041 2.1e-06 55.8 66 47.0
Lsat_1_v5_gn_7_76661 Lactuca sativa HOM05D000257 ORTHO05D004041 2.1e-06 55.8 68 44.1
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 2.7e-06 55.5 68 44.1
ECA236G0381 Erigeron canadensis HOM05D000257 ORTHO05D004041 6.1e-06 54.3 66 43.9
HanXRQChr07g0187311 Helianthus annuus HOM05D000257 ORTHO05D004041 6.1e-06 54.3 66 43.9
MELO3C019828.2 Cucumis melo HOM05D000257 ORTHO05D004041 7.9e-06 53.9 75 41.3


User provided reference genes

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