Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 1.7e-94 349.4 184 100.0
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 5.1e-46 188.3 206 55.3
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 5.1e-46 188.3 193 56.0
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 4.3e-45 185.3 193 54.9
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 5.6e-45 184.9 191 57.6
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 7.4e-45 184.5 213 54.0
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 1.3e-44 183.7 186 59.7
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 2.1e-44 183.0 196 55.1
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 1.8e-43 179.9 195 55.9
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 3.4e-42 175.6 117 72.6
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 1.3e-41 173.7 145 63.4
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 1.7e-41 173.3 179 56.4
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 2.2e-41 172.9 198 54.0
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 3.8e-41 172.2 204 52.5
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 4.9e-41 171.8 190 54.2
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 6.5e-41 171.4 204 52.5
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 1.1e-40 170.6 192 51.0
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 1.9e-40 169.9 120 72.5
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 2.5e-40 169.5 121 72.7
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 2.5e-40 169.5 200 54.5
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 3.2e-40 169.1 204 52.9
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 3.2e-40 169.1 204 52.9
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 4.2e-40 168.7 184 52.2
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 2.1e-39 166.4 206 51.9
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 2.7e-39 166.0 194 48.5
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 3.5e-39 165.6 135 62.2
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 3.5e-39 165.6 113 69.0
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 4.6e-39 165.2 194 47.9
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 6.0e-39 164.9 192 51.0
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 7.9e-39 164.5 175 54.9
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 1.3e-38 163.7 194 49.5
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 1.3e-38 163.7 166 56.0
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 1.8e-38 163.3 196 51.5
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 1.8e-38 163.3 196 51.5
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 1.8e-38 163.3 203 50.2
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 1.8e-38 163.3 159 56.6
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 2.3e-38 162.9 109 74.3
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 2.3e-38 162.9 194 50.5
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 3.0e-38 162.5 109 75.2
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 3.0e-38 162.5 195 50.8
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 3.0e-38 162.5 198 49.5
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 3.9e-38 162.2 190 53.7
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 3.9e-38 162.2 175 55.4
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 3.9e-38 162.2 126 63.5
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 5.1e-38 161.8 195 53.8
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 8.7e-38 161.0 120 65.8
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 8.7e-38 161.0 192 51.6
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 8.7e-38 161.0 167 53.3
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 1.5e-37 160.2 205 51.7
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 1.9e-37 159.8 182 48.9
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 1.9e-37 159.8 160 58.8
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 2.5e-37 159.5 166 54.2
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 4.3e-37 158.7 153 54.2
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 5.7e-37 158.3 157 53.5
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 9.6e-37 157.5 192 52.6
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 1.3e-36 157.1 170 53.5
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 2.1e-36 156.4 130 57.7
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 4.8e-36 155.2 163 56.4
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 6.2e-36 154.8 110 64.5
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 8.2e-36 154.5 185 53.0
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 8.2e-36 154.5 132 57.6
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 1.4e-35 153.7 114 68.4
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 3.1e-35 152.5 109 70.6
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 4.1e-35 152.1 193 49.2
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 9.0e-35 151.0 106 69.8
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 1.2e-34 150.6 109 62.4
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 2.0e-34 149.8 109 73.4
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 2.0e-34 149.8 102 72.5
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 2.6e-34 149.4 106 74.5
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 2.6e-34 149.4 183 53.0
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 4.5e-34 148.7 188 51.6
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 5.8e-34 148.3 95 68.4
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 5.8e-34 148.3 95 75.8
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 1.0e-33 147.5 104 70.2
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 1.3e-33 147.1 191 44.5
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 1.7e-33 146.7 190 50.5
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 2.9e-33 146.0 187 49.7
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 2.9e-33 146.0 188 52.1
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 2.9e-33 146.0 188 52.1
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 3.8e-33 145.6 169 53.8
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 1.9e-32 143.3 185 48.1
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 2.5e-32 142.9 108 68.5
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 3.2e-32 142.5 208 41.8
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 4.2e-32 142.1 187 49.7
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 4.2e-32 142.1 186 48.4
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 1.0e-30 137.5 108 57.4
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 1.5e-29 133.7 140 57.9
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 1.9e-29 133.3 164 47.6
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 2.5e-29 132.9 93 71.0
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 1.6e-28 130.2 112 63.4
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 3.4e-26 122.5 104 58.7
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 4.5e-26 122.1 109 60.6
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 1.1e-24 117.5 83 69.9
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 2.5e-24 116.3 74 75.7
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 7.2e-24 114.8 123 49.6
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 1.0e-22 110.9 108 57.4
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 3.0e-22 109.4 87 63.2
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 3.9e-22 109.0 87 51.7
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 8.8e-22 107.8 75 69.3
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 1.3e-20 104.0 114 44.7
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 6.3e-20 101.7 131 48.9
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-18 97.1 89 51.7
Actinidia02294 Actinidia chinensis HOM05D007365 ORTHO05D009309 1.9e-16 90.1 175 41.1
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 3.2e-16 89.4 62 71.0
MELO3C035474.2 Cucumis melo HOM05D007365 ORTHO05D009309 1.3e-09 67.4 80 51.2
CsaV3_2G014000 Cucumis sativus L. HOM05D007365 ORTHO05D009309 1.3e-09 67.4 44 72.7
A01p21190 Brassica napus HOM05D007365 ORTHO05D009309 1.8e-06 57.0 121 35.5


User provided reference genes

Program Settings