Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 3.1e-79 298.5 165 100.0
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 8.9e-58 227.3 151 77.5
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 8.1e-43 177.6 151 62.9
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.4e-42 176.8 150 63.3
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.5e-41 173.3 146 64.4
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 1.5e-41 173.3 179 58.1
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 5.8e-41 171.4 156 61.5
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 9.9e-41 170.6 171 56.1
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 4.9e-40 168.3 146 61.6
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 8.4e-40 167.5 150 60.0
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.9e-39 166.4 146 61.6
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 3.2e-39 165.6 162 58.6
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 1.6e-38 163.3 172 59.9
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 2.7e-38 162.5 146 58.9
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 6.0e-38 161.4 163 55.8
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.0e-37 160.6 141 59.6
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.0e-37 160.6 141 59.6
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.7e-37 159.8 152 56.6
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 3.0e-37 159.1 132 62.9
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 6.6e-37 157.9 152 56.6
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.9e-36 156.4 162 53.7
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 2.5e-36 156.0 146 57.5
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 5.6e-36 154.8 175 57.7
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.2e-35 153.7 164 55.5
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.6e-35 153.3 146 58.2
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 1.6e-35 153.3 174 53.4
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.6e-35 153.3 153 54.2
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 2.8e-35 152.5 144 56.9
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 2.8e-35 152.5 144 56.9
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 3.6e-35 152.1 129 63.6
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 4.7e-35 151.8 152 53.9
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.8e-34 149.8 166 53.0
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.4e-34 149.4 150 55.3
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 2.4e-34 149.4 145 56.6
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 5.2e-34 148.3 179 50.3
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 6.9e-34 147.9 166 51.8
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 2.6e-33 146.0 149 52.3
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.4e-33 145.2 144 57.6
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 5.8e-33 144.8 161 49.7
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 9.9e-33 144.1 128 59.4
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 9.9e-33 144.1 142 56.3
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 9.9e-33 144.1 169 53.3
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 2.2e-32 142.9 138 58.7
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 2.9e-32 142.5 119 63.0
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.9e-32 142.5 138 55.1
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.9e-32 142.5 153 54.2
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 3.8e-32 142.1 161 52.8
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 8.4e-32 141.0 141 53.9
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.4e-31 140.2 140 54.3
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 2.4e-31 139.4 170 48.8
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 7.1e-31 137.9 141 53.9
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 7.1e-31 137.9 149 51.7
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.2e-30 137.1 145 52.4
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.2e-30 137.1 144 54.9
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.2e-30 137.1 141 51.8
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.2e-30 137.1 150 53.3
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.6e-30 136.7 152 53.3
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 1.6e-30 136.7 153 51.0
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 1.6e-30 136.7 167 55.1
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 3.5e-30 135.6 167 50.3
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 6.0e-30 134.8 152 49.3
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 6.0e-30 134.8 148 50.7
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 6.0e-30 134.8 173 48.6
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 7.8e-30 134.4 150 50.7
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 1.0e-29 134.0 143 53.1
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.0e-29 134.0 158 49.4
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.0e-29 134.0 142 47.2
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.0e-29 134.0 124 55.6
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.3e-29 133.7 142 50.7
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.9e-29 132.1 151 49.7
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 3.9e-29 132.1 124 54.0
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 3.9e-29 132.1 153 51.6
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 5.1e-29 131.7 136 54.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 5.1e-29 131.7 146 50.7
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 6.6e-29 131.3 174 48.9
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.5e-28 130.2 138 52.2
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 9.6e-28 127.5 151 50.3
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 2.1e-27 126.3 116 56.0
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 4.8e-27 125.2 165 46.1
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 4.8e-27 125.2 159 45.3
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.4e-26 123.6 146 49.3
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.4e-26 123.6 153 47.7
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.8e-26 123.2 160 44.4
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.1e-26 122.5 151 49.0
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 4.0e-26 122.1 157 50.3
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 5.3e-26 121.7 167 50.9
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 5.3e-26 121.7 167 50.9
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 6.9e-26 121.3 139 50.4
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 6.9e-26 121.3 139 50.4
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 9.0e-26 120.9 152 46.7
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 1.5e-25 120.2 139 46.0
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 2.0e-25 119.8 139 50.4
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.6e-25 119.4 151 49.7
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 2.6e-25 119.4 173 42.8
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 2.6e-25 119.4 120 58.3
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 3.4e-25 119.0 155 49.0
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 3.4e-25 119.0 120 56.7
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.5e-25 118.6 145 47.6
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 5.8e-25 118.2 140 50.0
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 5.8e-25 118.2 164 44.5
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 7.6e-25 117.9 136 50.7
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.3e-24 117.1 146 47.3
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 1.3e-24 117.1 153 47.7
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 2.2e-24 116.3 157 47.8
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 2.9e-24 115.9 164 43.9
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 2.9e-24 115.9 163 45.4
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 3.8e-24 115.5 164 45.7
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 4.9e-24 115.2 164 45.7
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 4.9e-24 115.2 164 45.7
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 4.9e-24 115.2 164 45.7
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 4.9e-24 115.2 164 45.7
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 8.4e-24 114.4 164 45.7
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 2.4e-23 112.8 128 52.3
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 3.2e-23 112.5 167 40.7
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 9.3e-23 110.9 147 44.9
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 9.3e-23 110.9 147 44.2
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.2e-22 110.5 147 44.9
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 2.7e-22 109.4 127 51.2
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.6e-22 108.6 147 44.9
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.3e-21 106.3 115 53.0
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.3e-20 102.4 100 59.0
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 2.1e-19 99.8 147 41.5
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 8.1e-19 97.8 122 45.1
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 5.3e-18 95.1 161 39.8
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 5.3e-18 95.1 111 47.7
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 9.0e-18 94.4 155 43.9
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 2.6e-17 92.8 157 43.3
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 2.1e-14 83.2 115 48.7
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 5.1e-13 78.6 70 55.7
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 5.1e-13 78.6 155 38.1
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 2.6e-09 66.2 127 35.4
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 5.8e-09 65.1 132 39.4
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 7.6e-09 64.7 96 39.6
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 3.8e-08 62.4 142 32.4
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 6.5e-08 61.6 103 40.8
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.1e-07 60.8 136 31.6
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 7.1e-07 58.2 119 34.5
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 4.6e-06 55.5 187 30.5
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 6.0e-06 55.1 138 33.3


User provided reference genes

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