Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.3e-307 1058.9 544 100.0
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 9.8e-263 909.8 533 87.6
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.6e-260 902.5 532 86.5
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.2e-249 866.3 537 82.7
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 8.1e-249 863.6 530 81.5
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.0e-248 861.3 523 83.2
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.1e-245 853.2 532 80.5
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 7.1e-245 850.5 532 82.1
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 7.1e-245 850.5 532 81.6
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 9.2e-245 850.1 529 80.0
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.2e-244 849.7 532 80.1
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.7e-244 848.6 533 80.9
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.0e-243 846.7 528 79.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.1e-242 843.2 533 80.9
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 3.1e-240 835.1 532 78.6
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.8e-238 828.2 532 79.3
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 8.4e-238 827.0 537 77.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 3.2e-237 825.1 533 77.3
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.7e-236 822.0 523 79.9
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.7e-235 819.3 527 77.8
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.9e-235 818.1 523 79.0
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.1e-234 816.6 523 79.5
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.9e-234 815.8 530 77.2
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 7.6e-231 803.9 528 77.7
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 6.4e-230 800.8 531 77.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.1e-229 800.0 527 78.4
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 4.2e-229 798.1 539 75.9
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 7.1e-229 797.3 523 76.9
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.6e-228 796.2 530 77.0
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.7e-228 795.4 543 74.4
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.7e-228 795.4 515 77.5
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 6.0e-228 794.3 531 76.6
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.0e-227 793.5 521 77.7
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.3e-227 793.1 528 77.5
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.7e-227 792.7 543 74.2
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 8.7e-227 790.4 530 77.7
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.5e-226 788.9 524 76.1
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 3.3e-226 788.5 531 75.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 5.6e-226 787.7 524 76.1
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 7.3e-226 787.3 530 74.7
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.3e-225 786.6 531 75.9
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-225 786.6 527 76.1
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-225 786.6 527 76.1
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-225 786.6 527 76.1
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-225 786.2 526 74.9
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.1e-225 785.8 530 75.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 2.1e-225 785.8 526 76.2
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.1e-225 785.8 530 75.8
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.1e-225 785.8 530 75.8
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.1e-225 785.8 528 74.4
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.8e-225 785.4 532 75.0
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 4.8e-225 784.6 464 84.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 8.1e-225 783.9 532 74.8
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.1e-225 783.9 524 75.8
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 8.1e-225 783.9 530 76.0
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.1e-224 783.5 530 75.8
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-224 783.1 532 74.6
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.4e-224 782.3 526 74.5
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.1e-224 781.9 529 75.6
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 6.9e-224 780.8 536 72.6
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.0e-223 779.2 519 76.9
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.0e-223 779.2 531 75.0
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.6e-223 778.9 536 73.1
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.6e-223 778.9 529 73.0
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 3.4e-223 778.5 530 74.9
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 4.5e-223 778.1 529 75.2
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 5.8e-223 777.7 537 73.0
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 5.8e-223 777.7 531 76.5
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.6e-223 777.3 522 76.1
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 7.6e-223 777.3 516 77.5
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 2.2e-222 775.8 464 84.1
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.9e-222 775.4 532 74.2
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 3.8e-222 775.0 522 75.5
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 8.4e-222 773.9 519 74.8
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.6e-220 769.6 536 71.8
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.7e-220 768.8 530 74.3
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.3e-219 765.8 517 75.6
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 8.7e-219 763.8 508 74.8
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.1e-218 763.5 522 73.9
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.5e-218 763.1 533 74.7
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.9e-218 762.7 556 70.9
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.9e-218 762.7 532 73.9
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.6e-218 761.1 479 78.9
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 6.2e-217 757.7 523 72.7
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.2e-215 753.4 487 77.6
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 4.5e-215 751.5 482 78.6
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 4.9e-214 748.0 527 74.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.8e-211 739.6 505 75.2
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.9e-210 736.1 530 71.9
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.5e-210 735.7 437 84.4
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 3.3e-210 735.3 543 70.9
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 4.8e-209 731.5 520 69.4
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.1e-208 730.3 531 68.0
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 2.6e-207 725.7 540 68.0
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.7e-206 723.0 542 67.5
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.2e-206 722.6 526 69.2
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.1e-205 720.3 533 68.3
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.9e-205 719.5 533 68.3
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.6e-204 716.5 524 67.7
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.8e-203 713.0 528 68.4
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 3.0e-203 712.2 528 68.2
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.9e-202 709.5 523 67.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 5.7e-202 708.0 519 66.7
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 9.7e-202 707.2 530 67.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.3e-198 696.8 453 78.8
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.2e-198 696.0 526 66.2
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 2.9e-198 695.7 522 65.5
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 4.1e-192 675.2 458 72.9
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.5e-191 673.3 462 71.2
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.6e-188 663.3 539 62.7
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.6e-188 663.3 523 63.7
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.4e-187 660.2 430 77.7
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 9.1e-184 647.5 530 62.3
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.3e-178 629.0 518 61.0
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.1e-176 622.5 392 78.1
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.2e-172 610.5 389 78.9
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.5e-170 603.6 387 77.3
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.6e-170 602.8 523 59.1
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.0e-163 579.3 462 62.3
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 3.4e-162 575.9 521 58.9
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 3.8e-158 562.4 393 70.2
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.2e-153 546.6 390 68.5
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 3.9e-150 535.8 363 74.7
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 9.8e-146 521.2 317 81.4
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.6e-140 503.8 344 73.8
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.1e-134 482.3 325 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 3.0e-126 456.4 521 47.2
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.9e-126 456.1 471 48.2
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 6.2e-124 448.7 456 49.6
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 3.6e-116 422.9 559 42.2
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.0e-106 390.6 227 86.8
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 7.6e-106 388.7 540 39.1
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 5.7e-93 345.9 248 72.2
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-77 295.0 193 75.1
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.9e-70 270.0 185 74.6
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-64 251.9 151 83.4
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 4.7e-63 246.5 186 68.3
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.4e-54 218.4 171 62.6
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 9.8e-53 212.2 136 76.5
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.6e-50 204.9 154 68.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.7e-45 186.4 140 66.4
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 6.3e-44 183.0 161 57.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-40 171.8 145 62.8
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.2e-35 152.5 95 80.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 6.2e-31 139.8 149 53.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.4e-27 128.6 110 60.9
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-21 108.6 74 71.6
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.0e-21 108.2 501 23.2
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 4.4e-21 107.1 71 70.4
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 3.9e-17 94.0 465 23.7
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 4.9e-12 77.0 67 55.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 4.9e-12 77.0 67 55.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 8.6e-09 66.2 46 65.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 2.1e-07 61.6 50 58.0
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 4.7e-07 60.5 46 60.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 4.0e-06 57.4 46 58.7


User provided reference genes

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