Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G068100 Manihot esculenta HOM05D006473 ORTHO05D008108 1.9e-77 292.7 181 100.0
Potri.006G008000 Populus trichocarpa HOM05D006473 ORTHO05D008108 1.2e-44 183.7 168 57.1
Sabra06G0006200 Salix brachista HOM05D006473 ORTHO05D008108 3.6e-44 182.2 168 54.8
TWI34G1686 Tripterygium wilfordii HOM05D006473 ORTHO05D008108 1.3e-41 173.7 163 64.4
Prupe.3G184300 Prunus persica HOM05D006473 ORTHO05D008108 8.3e-41 171.0 169 59.8
RcHm_v2.0_Chr2g0153221 Rosa chinensis HOM05D006473 ORTHO05D008108 7.0e-40 167.9 169 52.7
FAN05G1961 Fragaria x ananassa HOM05D006473 ORTHO05D008108 7.8e-39 164.5 169 51.5
Thecc.01G174700 Theobroma cacao HOM05D006473 ORTHO05D008108 7.8e-39 164.5 161 53.4
COL.COLO4_19989 Corchorus olitorius HOM05D006473 ORTHO05D008108 2.3e-38 162.9 168 58.3
Duzib138G0874 Durio zibethinus HOM05D006473 ORTHO05D008108 5.0e-38 161.8 163 52.1
FvH4_6g39300 Fragaria vesca HOM05D006473 ORTHO05D008108 1.1e-37 160.6 167 51.5
Haze_13544 Corylus avellana HOM05D006473 ORTHO05D008108 1.5e-37 160.2 161 52.2
MD17G1129800 Malus domestica HOM05D006473 ORTHO05D008108 1.9e-37 159.8 174 51.7
Cfa023365 Carpinus fangiana HOM05D006473 ORTHO05D008108 3.3e-37 159.1 161 52.2
MD09G1143500 Malus domestica HOM05D006473 ORTHO05D008108 5.6e-37 158.3 163 53.4
CiPaw.03G109100 Carya illinoinensis HOM05D006473 ORTHO05D008108 2.1e-36 156.4 163 52.1
COL.COLO4_18222 Corchorus olitorius HOM05D006473 ORTHO05D008108 2.1e-36 156.4 170 57.1
Gohir.A11G155300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 3.6e-36 155.6 170 47.6
FAN09G0937 Fragaria x ananassa HOM05D006473 ORTHO05D008108 8.0e-36 154.5 176 49.4
FAN14G2613 Fragaria x ananassa HOM05D006473 ORTHO05D008108 8.0e-36 154.5 176 49.4
Gohir.D11G162300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 3.1e-35 152.5 170 47.1
Gorai.007G172600 Gossypium raimondii HOM05D006473 ORTHO05D008108 3.1e-35 152.5 170 47.1
Sabra16G0000300 Salix brachista HOM05D006473 ORTHO05D008108 6.8e-35 151.4 171 48.5
Ciclev10012907m.g Citrus clementina HOM05D006473 ORTHO05D008108 1.2e-34 150.6 160 49.4
MELO3C026363.2 Cucumis melo HOM05D006473 ORTHO05D008108 3.4e-34 149.1 149 55.0
Lj6g0005292 Lotus japonicus HOM05D006473 ORTHO05D008108 4.4e-34 148.7 161 49.7
Eucgr.A00949 Eucalyptus grandis HOM05D006473 ORTHO05D008108 9.8e-34 147.5 167 50.3
CANSAT64G1482 Cannabis sativa HOM05D006473 ORTHO05D008108 2.2e-33 146.4 168 56.0
PGR031G0759 Punica granatum HOM05D006473 ORTHO05D008108 6.4e-33 144.8 161 51.6
Sed0027280 Sechium edule HOM05D006473 ORTHO05D008108 2.4e-32 142.9 150 52.0
Glyma.13G004200 Glycine max HOM05D006473 ORTHO05D008108 4.1e-32 142.1 156 48.7
ClCG11G016910 Citrullus lanatus HOM05D006473 ORTHO05D008108 5.4e-32 141.7 155 52.3
TPR.G17559 Trifolium pratense HOM05D006473 ORTHO05D008108 5.4e-32 141.7 164 48.2
CsaV3_4G032520 Cucumis sativus L. HOM05D006473 ORTHO05D008108 9.2e-32 141.0 154 52.6
Atru.chr8.1011 Acer truncatum HOM05D006473 ORTHO05D008108 1.2e-31 140.6 140 62.9
CiPaw.04G072200 Carya illinoinensis HOM05D006473 ORTHO05D008108 1.6e-31 140.2 168 47.6
Medtr3g082070 Medicago truncatula HOM05D006473 ORTHO05D008108 1.6e-31 140.2 158 50.6
Psat5g106240 Pisum sativum HOM05D006473 ORTHO05D008108 2.0e-31 139.8 164 47.6
QL10p019398 Quercus lobata HOM05D006473 ORTHO05D008108 8.6e-30 134.4 175 59.4
Phvul.007G120134 Phaseolus vulgaris HOM05D006473 ORTHO05D008108 1.5e-29 133.7 155 46.5
Glyma.20G063000 Glycine max HOM05D006473 ORTHO05D008108 1.9e-29 133.3 153 47.1
QL07p025679 Quercus lobata HOM05D006473 ORTHO05D008108 3.3e-29 132.5 174 58.0
VMungo0540G0033 Vigna mungo HOM05D006473 ORTHO05D008108 5.6e-29 131.7 154 47.4
arahy.Tifrunner.gnm1.ann1.ITU10B Arachis hypogaea HOM05D006473 ORTHO05D008108 7.3e-29 131.3 159 45.9
Sed0014549 Sechium edule HOM05D006473 ORTHO05D008108 2.1e-28 129.8 159 47.8
Cpa.g.sc8.265 Carica papaya HOM05D006473 ORTHO05D008108 6.2e-28 128.3 167 47.3
Lalb_Chr17g0337141 Lupinus albus HOM05D006473 ORTHO05D008108 6.2e-28 128.3 161 42.9
QL07p026949 Quercus lobata HOM05D006473 ORTHO05D008108 8.0e-28 127.9 174 56.9
arahy.Tifrunner.gnm1.ann1.UN21ID Arachis hypogaea HOM05D006473 ORTHO05D008108 1.4e-27 127.1 155 45.8
QL07p027003 Quercus lobata HOM05D006473 ORTHO05D008108 1.5e-26 123.6 174 56.9
Haze_13545 Corylus avellana HOM05D006473 ORTHO05D008108 2.0e-26 123.2 127 50.4
TAR626G1390 Trochodendron aralioides HOM05D006473 ORTHO05D008108 1.1e-24 117.5 160 45.0
QL04p064817 Quercus lobata HOM05D006473 ORTHO05D008108 4.1e-24 115.5 157 45.9
TAR626G1015 Trochodendron aralioides HOM05D006473 ORTHO05D008108 4.1e-24 115.5 159 45.3
Ca_16320_v3 Cicer arietinum L. HOM05D006473 ORTHO05D008108 4.6e-23 112.1 148 48.0
Nn7g38339 Nelumbo nucifera HOM05D006473 ORTHO05D008108 5.1e-22 108.6 157 41.4
QL04p064939 Quercus lobata HOM05D006473 ORTHO05D008108 8.6e-22 107.8 157 43.9
GSVIVG01015888001 Vitis vinifera HOM05D006473 ORTHO05D008108 4.3e-21 105.5 144 52.8
BraA05t20604Z Brassica rapa HOM05D006473 ORTHO05D008108 9.5e-21 104.4 153 45.1
Sp7g13370 Schrenkiella parvula HOM05D006473 ORTHO05D008108 1.2e-20 104.0 151 46.4
A05p16970 Brassica napus HOM05D006473 ORTHO05D008108 3.6e-20 102.4 153 44.4
A08p11670 Brassica napus HOM05D006473 ORTHO05D008108 4.7e-20 102.1 153 43.8
BraA08t33161Z Brassica rapa HOM05D006473 ORTHO05D008108 4.7e-20 102.1 153 43.8
Peaxi162Scf00322g00416 Petunia axillaris HOM05D006473 ORTHO05D008108 4.7e-20 102.1 166 42.8
BcaC07g37876 Brassica carinata HOM05D006473 ORTHO05D008108 8.1e-20 101.3 153 43.8
BolC8t48269H Brassica oleracea HOM05D006473 ORTHO05D008108 8.1e-20 101.3 153 43.8
BcaB02g07838 Brassica carinata HOM05D006473 ORTHO05D008108 2.3e-19 99.8 153 42.5
BcaB04g18284 Brassica carinata HOM05D006473 ORTHO05D008108 3.1e-19 99.4 153 41.2
Nitab4.5_0002292g0030 Nicotiana tabacum HOM05D006473 ORTHO05D008108 3.1e-19 99.4 158 41.8
Aa31LG9G2250 Aethionema arabicum HOM05D006473 ORTHO05D008108 4.0e-19 99.0 152 54.6
Peaxi162Scf00393g01011 Petunia axillaris HOM05D006473 ORTHO05D008108 4.0e-19 99.0 161 41.0
AL7G40560 Arabidopsis lyrata HOM05D006473 ORTHO05D008108 2.0e-18 96.7 153 51.6
AT4G15140 Arabidopsis thaliana HOM05D006473 ORTHO05D008108 2.0e-18 96.7 153 49.7
CAN.G529.20 Capsicum annuum HOM05D006473 ORTHO05D008108 2.0e-18 96.7 142 43.0
C06p16570 Brassica napus HOM05D006473 ORTHO05D008108 3.4e-18 95.9 153 42.5
BolC6t36859H Brassica oleracea HOM05D006473 ORTHO05D008108 3.4e-18 95.9 153 42.5
BcaC08g44251 Brassica carinata HOM05D006473 ORTHO05D008108 9.9e-18 94.4 153 41.8
Thhalv10027487m.g Eutrema salsugineum HOM05D006473 ORTHO05D008108 9.9e-18 94.4 153 52.3
Carub.0007s2685 Capsella rubella HOM05D006473 ORTHO05D008108 2.9e-17 92.8 156 44.2
Lsat_1_v5_gn_1_29560 Lactuca sativa HOM05D006473 ORTHO05D008108 2.9e-17 92.8 182 35.7
Sc07g0001930 Simmondsia chinensis HOM05D006473 ORTHO05D008108 2.9e-17 92.8 156 42.3
CARHR221880 Cardamine hirsuta HOM05D006473 ORTHO05D008108 3.7e-17 92.4 151 45.7
THA.LOC104808506 Tarenaya hassleriana HOM05D006473 ORTHO05D008108 6.4e-17 91.7 157 36.9
EL10Ac6g15336 Beta vulgaris HOM05D006473 ORTHO05D008108 1.4e-16 90.5 159 36.5
Migut.H01260 Erythranthe guttata HOM05D006473 ORTHO05D008108 3.2e-16 89.4 149 38.3
QL09p045725 Quercus lobata HOM05D006473 ORTHO05D008108 3.2e-16 89.4 140 54.3
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 1.2e-15 87.4 131 55.7
ECA247G3587 Erigeron canadensis HOM05D006473 ORTHO05D008108 1.6e-15 87.0 171 39.2
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 1.6e-15 87.0 166 35.5
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 2.1e-15 86.7 158 39.2
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 2.7e-15 86.3 166 35.5
vmacro08765 Vaccinium macrocarpon HOM05D006473 ORTHO05D008108 3.5e-15 85.9 167 38.3
Nitab4.5_0011512g0010 Nicotiana tabacum HOM05D006473 ORTHO05D008108 4.6e-15 85.5 162 38.9
Rhsim12G0015400 Rhododendron simsii HOM05D006473 ORTHO05D008108 1.0e-14 84.3 141 41.1
CSS0026100 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 1.7e-14 83.6 173 36.4
CSS0046570 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 1.7e-14 83.6 173 36.4
Actinidia32074 Actinidia chinensis HOM05D006473 ORTHO05D008108 6.6e-14 81.6 182 33.5
HanXRQChr02g0035171 Helianthus annuus HOM05D006473 ORTHO05D008108 8.6e-14 81.3 167 44.3
Hund04387 Selenicereus undatus HOM05D006473 ORTHO05D008108 5.6e-13 78.6 159 37.1
DCAR_029496 Daucus carota HOM05D006473 ORTHO05D008108 7.3e-13 78.2 191 36.6
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 7.3e-13 78.2 161 37.3
Cpa.g.sc32.52 Carica papaya HOM05D006473 ORTHO05D008108 1.2e-12 77.4 148 41.2
Aqoxy5G02466 Aquilegia oxysepala HOM05D006473 ORTHO05D008108 3.6e-12 75.9 140 37.9
PSO675G8005 Papaver somniferum HOM05D006473 ORTHO05D008108 3.6e-12 75.9 178 32.0
Actinidia12507 Actinidia chinensis HOM05D006473 ORTHO05D008108 1.4e-11 73.9 173 34.7
Cc00_g04870 Coffea canephora HOM05D006473 ORTHO05D008108 1.4e-11 73.9 147 34.7
Nitab4.5_0000170g0320 Nicotiana tabacum HOM05D006473 ORTHO05D008108 8.9e-11 71.2 39 84.6
CDE05G3197 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 1.5e-10 70.5 141 34.8
Zm00001eb078060 Zea mays HOM05D006473 ORTHO05D008108 2.6e-10 69.7 156 30.8
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 4.4e-10 68.9 111 41.4
QL05p058452 Quercus lobata HOM05D000045 ORTHO05D000611 4.4e-10 68.9 59 57.6
ATR0763G071 Amborella trichopoda HOM05D006473 ORTHO05D008108 9.9e-10 67.8 144 34.7
SGA_v2.0_scaffold49G18372 Striga asiatica HOM05D006473 ORTHO05D008108 1.7e-09 67.0 139 34.5
CDE11G0296 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 4.2e-08 62.4 37 73.0
Os04g0504200 Oryza sativa ssp. japonica HOM05D006473 ORTHO05D008108 4.2e-08 62.4 161 29.2
HPP92_016064 Vanilla planifolia HOM05D006473 ORTHO05D008108 4.2e-08 62.4 39 66.7
AUR62017858 Chenopodium quinoa HOM05D006473 ORTHO05D008108 5.4e-08 62.0 149 34.9
Oeu027256.1 Olea europaea HOM05D006473 ORTHO05D008108 2.7e-07 59.7 30 80.0
unitig_62.g23243 Utricularia gibba HOM05D006473 ORTHO05D008108 6.0e-07 58.5 35 71.4


User provided reference genes

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