Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 5.1e-123 444.5 236 100.0
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 3.1e-88 328.9 237 78.5
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 3.9e-67 258.8 255 59.6
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 6.7e-67 258.1 258 60.5
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 3.3e-66 255.8 259 59.8
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 8.2e-65 251.1 260 60.0
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 5.3e-64 248.4 246 58.5
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 2.0e-63 246.5 243 61.7
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.1e-61 240.7 243 60.9
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 1.2e-60 237.3 243 59.3
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.4e-59 233.8 259 56.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.3e-59 233.0 243 57.6
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 2.0e-58 229.9 248 57.7
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 3.3e-58 229.2 248 56.9
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.3e-57 227.3 238 59.7
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 6.3e-57 224.9 237 59.1
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.6e-55 220.3 235 58.7
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 7.7e-55 218.0 262 55.7
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.2e-52 210.7 248 55.6
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 1.0e-51 207.6 263 53.2
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.8e-51 206.8 250 53.2
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 1.8e-51 206.8 234 54.3
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 3.0e-51 206.1 239 57.3
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 8.8e-51 204.5 243 54.3
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 2.0e-50 203.4 228 52.6
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 6.3e-49 198.4 243 51.4
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 9.1e-48 194.5 258 51.6
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.2e-47 194.1 239 50.2
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.6e-47 193.7 243 56.8
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 2.0e-47 193.4 246 48.8
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 5.9e-47 191.8 255 51.0
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.7e-46 190.3 216 55.1
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 1.7e-46 190.3 258 50.4
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 2.9e-46 189.5 247 53.0
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 8.5e-46 188.0 260 55.4
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 8.5e-46 188.0 261 50.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.1e-45 187.6 261 55.2
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.5e-45 186.4 254 49.2
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 4.2e-45 185.7 259 53.3
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 4.2e-45 185.7 189 58.7
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 7.2e-45 184.9 259 54.1
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 1.4e-43 180.6 247 49.4
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.4e-43 180.6 251 47.0
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 4.0e-43 179.1 235 49.4
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.6e-42 176.4 244 50.8
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 5.7e-42 175.3 281 44.1
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 7.5e-42 174.9 252 48.4
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.8e-41 172.9 240 48.3
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 4.9e-41 172.2 180 59.4
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 8.3e-41 171.4 242 50.8
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 8.3e-41 171.4 242 51.7
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.4e-40 169.9 242 51.2
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 3.1e-40 169.5 249 49.4
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 4.1e-40 169.1 248 47.2
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 5.4e-40 168.7 239 52.3
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 2.7e-39 166.4 267 49.1
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 4.5e-39 165.6 249 49.8
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 4.5e-39 165.6 246 48.0
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.3e-38 164.1 239 44.8
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.7e-38 163.7 243 45.7
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.8e-38 162.5 242 45.9
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 6.6e-38 161.8 240 47.5
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.6e-37 158.7 243 45.3
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-36 157.5 243 45.7
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 6.1e-36 155.2 245 46.5
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.0e-35 154.5 235 45.1
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.0e-35 154.5 238 43.7
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.0e-35 152.9 250 44.0
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 8.9e-35 151.4 237 43.9
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.5e-34 150.6 237 43.9
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.0e-34 150.2 238 42.4
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.6e-34 149.8 250 44.8
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.6e-34 149.8 237 43.9
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 7.5e-34 148.3 254 43.7
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.7e-33 147.1 240 43.3
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 2.9e-33 146.4 256 44.1
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 3.7e-33 146.0 232 44.8
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 6.4e-33 145.2 253 42.7
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 6.4e-33 145.2 246 45.1
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 8.3e-33 144.8 236 42.8
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.1e-32 144.4 249 41.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.1e-32 144.4 172 62.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.4e-32 144.1 242 44.6
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 3.2e-32 142.9 236 42.4
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 4.1e-32 142.5 242 44.6
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 4.1e-32 142.5 243 45.3
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 4.1e-32 142.5 244 43.4
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.2e-31 141.0 246 47.2
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 2.7e-31 139.8 241 43.2
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 3.5e-31 139.4 241 44.0
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 4.6e-31 139.0 249 43.8
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.0e-30 137.9 251 41.8
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.0e-30 137.9 251 41.8
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.0e-30 137.9 242 43.4
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.0e-30 137.9 240 44.2
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 2.3e-30 136.7 249 43.4
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 2.3e-30 136.7 249 43.4
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 3.9e-30 136.0 265 39.2
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.9e-30 136.0 234 41.0
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.1e-29 134.4 249 41.8
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.9e-29 133.7 256 41.0
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 4.3e-29 132.5 261 41.8
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 4.3e-29 132.5 257 42.0
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 9.5e-29 131.3 242 39.7
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.2e-28 131.0 238 42.4
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 2.8e-28 129.8 235 48.5
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.6e-28 129.4 269 41.6
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 8.0e-28 128.3 261 41.4
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.0e-27 127.9 245 39.2
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.0e-27 127.9 245 39.2
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.0e-27 127.9 253 41.1
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.8e-27 127.1 249 41.0
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.8e-27 127.1 244 39.3
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.3e-27 126.7 247 39.7
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 8.9e-27 124.8 259 37.8
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.5e-26 124.0 245 40.8
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 2.0e-26 123.6 245 40.8
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.6e-26 123.2 237 38.8
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 2.6e-26 123.2 243 39.1
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 7.5e-26 121.7 246 38.2
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 7.5e-26 121.7 246 39.0
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 9.8e-26 121.3 247 40.1
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 9.8e-26 121.3 247 40.1
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 9.8e-26 121.3 247 40.1
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.3e-25 120.9 237 38.4
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.7e-25 120.6 197 42.6
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.7e-25 120.6 238 38.2
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 2.2e-25 120.2 236 42.4
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 8.3e-25 118.2 155 49.0
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.4e-24 117.5 239 41.4
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 3.2e-24 116.3 190 45.8
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 4.1e-24 115.9 246 38.2
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 7.0e-24 115.2 190 45.3
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 7.0e-24 115.2 246 39.0
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.6e-23 114.0 240 37.5
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.6e-23 112.5 220 40.9
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 5.0e-22 109.0 255 37.3
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 8.6e-22 108.2 250 36.4
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 8.6e-22 108.2 242 38.8
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 1.1e-21 107.8 194 42.8
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.1e-19 101.3 238 39.1
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.1e-19 101.3 130 50.0
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.8e-19 100.5 190 40.5
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 1.2e-18 97.8 244 34.4
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 2.0e-18 97.1 244 34.0
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 7.5e-18 95.1 242 34.7
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.7e-17 94.0 228 34.6
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 6.4e-17 92.0 239 37.7
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.2e-16 89.7 181 39.8
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 6.0e-15 85.5 247 33.2
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.7e-14 84.0 180 39.4
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 5.6e-13 79.0 141 39.0
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 6.2e-12 75.5 197 33.0
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 4.0e-11 72.8 95 50.5
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 5.2e-11 72.4 162 37.0
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 6.4e-09 65.5 208 35.1
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.1e-08 64.7 80 48.8
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 1.1e-08 64.7 219 33.3
Nn1g03499 Nelumbo nucifera HOM05D004369 ORTHO05D004907 5.4e-08 62.4 90 48.9
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 7.1e-08 62.0 93 40.9
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 9.2e-08 61.6 136 33.8
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 3.5e-07 59.7 104 41.3
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.0e-06 58.2 88 42.0


User provided reference genes

Program Settings