Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 2.2e-20 101.3 49 100.0
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 1.7e-17 91.7 49 87.8
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 1.2e-15 85.5 49 77.6
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 2.8e-15 84.3 49 81.6
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 8.0e-15 82.8 49 75.5
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 1.0e-14 82.4 49 77.6
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 1.8e-14 81.6 49 75.5
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 5.2e-14 80.1 49 73.5
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 5.2e-14 80.1 49 75.5
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 6.8e-14 79.7 49 73.5
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 8.9e-14 79.3 48 70.8
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 3.4e-13 77.4 49 71.4
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 3.4e-13 77.4 45 75.6
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 1.7e-12 75.1 47 70.2
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 2.2e-12 74.7 49 63.3
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 4.9e-12 73.6 46 71.7
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 6.4e-12 73.2 46 71.7
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 6.4e-12 73.2 47 66.0
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 6.4e-12 73.2 47 66.0
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 8.3e-12 72.8 45 73.3
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 1.1e-11 72.4 49 69.4
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 1.1e-11 72.4 47 66.0
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 1.4e-11 72.0 46 67.4
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 1.9e-11 71.6 47 68.1
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 1.9e-11 71.6 49 67.3
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 1.9e-11 71.6 49 65.3
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 3.2e-11 70.9 49 65.3
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 7.0e-11 69.7 47 61.7
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 9.2e-11 69.3 49 67.3
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 9.2e-11 69.3 49 67.3
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 9.2e-11 69.3 49 67.3
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 1.2e-10 68.9 49 61.2
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 2.0e-10 68.2 49 59.2
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 4.6e-10 67.0 49 59.2
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 4.6e-10 67.0 49 59.2
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 4.6e-10 67.0 49 59.2
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 4.6e-10 67.0 49 59.2
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 6.0e-10 66.6 49 57.1
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 6.0e-10 66.6 49 57.1
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 1.3e-09 65.5 49 59.2
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 1.3e-09 65.5 49 57.1
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 1.3e-09 65.5 48 60.4
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 1.7e-09 65.1 47 57.4
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 2.3e-09 64.7 49 55.1
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 1.5e-08 62.0 44 59.1
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 1.9e-08 61.6 47 55.3
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 3.3e-08 60.8 49 57.1
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 5.6e-08 60.1 50 62.0
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 1.2e-07 58.9 46 58.7
Os07g0213500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 4.7e-07 57.0 49 51.0
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 6.2e-07 56.6 49 57.1
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 8.1e-07 56.2 37 64.9
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 1.4e-06 55.5 39 59.0
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 1.4e-06 55.5 49 51.0
Os03g0810500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 3.1e-06 54.3 49 51.0
RcHm_v2.0_Chr3g0477841 Rosa chinensis HOM05D008360 ORTHO05D010532 6.8e-06 53.1 30 76.7


User provided reference genes

Program Settings