Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 5.6e-28 126.7 57 100.0
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 4.3e-20 100.5 55 78.2
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 1.1e-18 95.9 58 79.3
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 3.1e-18 94.4 57 73.7
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 1.2e-17 92.4 58 72.4
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 2.6e-17 91.3 58 74.1
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 5.9e-17 90.1 59 76.3
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 1.3e-16 89.0 61 72.1
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 1.3e-16 89.0 59 72.9
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 1.7e-16 88.6 61 72.1
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 5.0e-16 87.0 55 74.5
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 1.1e-15 85.9 59 71.2
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 1.1e-15 85.9 59 71.2
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 1.1e-15 85.9 57 71.9
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 3.2e-15 84.3 57 64.9
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 7.2e-15 83.2 57 70.2
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 9.3e-15 82.8 55 65.5
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 9.3e-15 82.8 57 66.7
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 9.3e-15 82.8 57 66.7
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 1.6e-14 82.0 57 68.4
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 1.6e-14 82.0 55 65.5
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 2.7e-14 81.3 59 67.8
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 4.6e-14 80.5 58 63.8
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 7.9e-14 79.7 56 66.1
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 1.4e-13 79.0 64 64.1
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 2.3e-13 78.2 55 63.6
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 2.3e-13 78.2 56 66.1
Lj1g0004562 Lotus japonicus HOM05D008152 ORTHO05D010231 1.1e-12 75.9 55 63.6
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 1.5e-12 75.5 59 61.0
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 1.9e-12 75.1 46 76.1
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 9.7e-12 72.8 56 58.9
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 9.7e-12 72.8 44 72.7
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 6.3e-11 70.1 62 59.7
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 8.2e-11 69.7 60 58.3
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 1.1e-10 69.3 61 59.0
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 3.1e-10 67.8 55 60.0
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 4.1e-10 67.4 63 52.4
Sed0007854 Sechium edule HOM05D008152 ORTHO05D010231 6.9e-10 66.6 57 54.4
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 3.4e-09 64.3 62 53.2
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 5.9e-09 63.5 52 57.7
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 7.7e-09 63.2 64 56.2
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 7.7e-09 63.2 53 56.6
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 1.0e-08 62.8 62 54.8
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 1.0e-08 62.8 60 50.0
Sed0008507 Sechium edule HOM05D008152 ORTHO05D010231 1.7e-08 62.0 43 58.1
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 2.2e-08 61.6 64 56.2
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 2.2e-08 61.6 64 56.2
Manes.11G003500 Manihot esculenta HOM05D008152 ORTHO05D010231 2.9e-08 61.2 37 64.9
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 3.8e-08 60.8 64 56.2
Ciclev10033235m.g Citrus clementina HOM05D008152 ORTHO05D010231 5.0e-08 60.5 31 80.6
BolC2t06131H Brassica oleracea HOM05D008152 ORTHO05D010231 8.5e-08 59.7 56 53.6
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 8.5e-08 59.7 59 47.5
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 1.1e-07 59.3 60 50.0
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 1.1e-07 59.3 52 57.7
Aa31LG1G21240 Aethionema arabicum HOM05D008152 ORTHO05D010231 1.4e-07 58.9 56 51.8
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 2.5e-07 58.2 63 50.8
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 2.5e-07 58.2 63 50.8
BraA02t04797Z Brassica rapa HOM05D008152 ORTHO05D010231 3.2e-07 57.8 62 51.6
ClCG05G020750 Citrullus lanatus HOM05D008152 ORTHO05D010231 3.2e-07 57.8 36 61.1
BcaB01g05882 Brassica carinata HOM05D008152 ORTHO05D010231 6.1e-06 53.5 48 56.2
Peaxi162Scf00130g01320 Petunia axillaris HOM05D008152 ORTHO05D010231 6.1e-06 53.5 46 58.7


User provided reference genes

Program Settings