Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 2.5e-169 598.6 285 100.0
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 9.3e-156 553.5 284 90.1
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 2.1e-155 552.4 286 89.9
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 1.8e-154 549.3 285 90.5
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 2.5e-153 545.4 284 89.4
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 3.3e-153 545.0 285 89.5
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 4.3e-153 544.7 285 89.1
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 5.7e-153 544.3 284 87.0
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 9.7e-153 543.5 285 90.2
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 9.7e-153 543.5 285 90.2
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.3e-152 543.1 284 87.3
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.7e-152 542.7 285 88.4
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 2.2e-152 542.3 284 89.1
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 6.3e-152 540.8 285 87.7
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 6.3e-152 540.8 285 88.4
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 1.1e-151 540.0 284 88.4
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 1.1e-151 540.0 284 88.4
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 3.1e-151 538.5 285 88.8
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 3.1e-151 538.5 285 87.4
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 6.9e-151 537.3 283 87.6
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.2e-150 536.6 285 87.0
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.0e-150 535.8 285 87.4
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 2.6e-150 535.4 285 85.6
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 2.6e-150 535.4 285 87.7
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 3.4e-150 535.0 285 87.4
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 4.5e-150 534.6 286 87.8
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 5.9e-150 534.3 285 85.6
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 7.7e-150 533.9 290 86.2
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.0e-149 533.5 285 87.7
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.3e-149 533.1 284 87.3
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 1.7e-149 532.7 285 86.7
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 2.2e-149 532.3 282 87.6
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 2.2e-149 532.3 285 86.3
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 3.8e-149 531.6 283 87.3
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 3.8e-149 531.6 285 85.6
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 3.8e-149 531.6 285 86.7
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 5.0e-149 531.2 288 86.8
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 1.1e-148 530.0 285 86.3
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 1.9e-148 529.3 284 85.2
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 2.5e-148 528.9 282 86.9
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 3.2e-148 528.5 285 86.7
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 84.9
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 84.9
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.6e-147 526.2 282 86.2
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 2.1e-147 525.8 284 86.3
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 2.1e-147 525.8 284 84.2
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.1e-147 525.8 285 84.2
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 85.6
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 1.8e-146 522.7 284 83.5
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.8e-146 522.7 286 85.7
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 2.3e-146 522.3 286 85.3
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 3.9e-146 521.5 289 84.1
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 5.1e-146 521.2 284 84.9
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 5.1e-146 521.2 285 84.9
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.1e-146 521.2 282 85.5
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 6.7e-146 520.8 284 83.5
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 8.8e-146 520.4 287 85.4
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 8.8e-146 520.4 282 85.1
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 8.8e-146 520.4 285 84.6
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.1e-145 520.0 284 85.6
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 2.6e-145 518.8 279 85.3
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 3.3e-145 518.5 283 83.0
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 4.4e-145 518.1 284 84.9
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 5.7e-145 517.7 283 84.8
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 1.3e-144 516.5 281 84.7
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 83.1
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 1.4e-143 513.1 285 83.2
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.4e-143 513.1 282 83.7
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 1.8e-143 512.7 284 85.2
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.4e-143 512.3 302 80.1
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 6.9e-143 510.8 282 84.0
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 1.2e-142 510.0 285 83.5
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 1.2e-142 510.0 285 82.5
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 2.0e-142 509.2 279 84.6
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 2.6e-142 508.8 285 82.5
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 3.4e-142 508.4 284 83.1
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 7.7e-142 507.3 285 83.2
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 1.0e-141 506.9 285 85.6
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 1.3e-141 506.5 285 82.8
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 1.7e-141 506.1 298 80.9
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 2.2e-141 505.8 273 84.6
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.9e-140 502.7 285 82.1
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 1.9e-140 502.7 280 83.6
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 2.5e-140 502.3 285 81.1
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 7.2e-140 500.7 285 81.1
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 7.2e-140 500.7 285 81.1
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 1.2e-139 500.0 285 81.1
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.2e-139 500.0 278 83.8
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.6e-139 499.6 285 81.1
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 4.7e-139 498.0 285 80.7
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 4.7e-139 498.0 282 81.9
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 8.0e-139 497.3 286 82.5
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.3e-138 495.7 285 82.5
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 3.0e-138 495.4 282 82.6
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 5.2e-138 494.6 286 81.8
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 6.7e-138 494.2 285 81.4
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 8.8e-138 493.8 286 81.8
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 8.8e-138 493.8 286 81.8
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 1.5e-137 493.0 271 83.4
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 2.6e-137 492.3 281 80.1
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 1.3e-136 490.0 284 80.3
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.4e-135 486.5 284 79.2
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 1.8e-135 486.1 279 79.9
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 2.9e-133 478.8 330 70.0
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 1.6e-131 473.0 246 89.0
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 2.1e-131 472.6 275 79.3
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 2.3e-130 469.2 279 77.8
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 1.1e-127 460.3 284 75.4
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 3.8e-125 451.8 275 77.5
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 4.2e-124 448.4 276 73.2
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 4.7e-123 444.9 287 76.7
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 8.8e-122 440.7 236 85.6
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 7.0e-119 431.0 282 70.2
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 1.5e-116 423.3 234 81.6
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 3.6e-115 418.7 225 87.6
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 7.8e-110 401.0 280 67.9
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 5.6e-108 394.8 278 67.6
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 4.0e-106 388.7 277 66.1
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 2.0e-105 386.3 196 90.3
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 9.5e-100 367.5 219 78.1
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 5.4e-95 351.7 282 61.3
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 8.1e-91 337.8 273 62.3
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 6.8e-90 334.7 289 59.5
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 5.8e-81 305.1 171 84.8
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 3.8e-80 302.4 167 85.0
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 3.0e-77 292.7 259 54.1
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 8.1e-67 258.1 273 47.6
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 3.4e-65 252.7 277 47.7
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 6.4e-64 248.4 283 47.3
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 1.9e-60 236.9 229 51.1
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 2.2e-56 223.4 114 86.0
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 8.4e-48 194.9 103 84.5
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 2.3e-21 107.1 78 65.4
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 1.7e-16 90.9 78 57.7
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 5.5e-15 85.9 71 62.0
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 4.4e-12 76.3 56 60.7
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 8.0e-06 55.5 39 69.2


User provided reference genes

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