Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2731.8 1382 100.0
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2592.4 1383 94.1
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2588.9 1383 93.6
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2583.5 1383 93.4
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2581.6 1382 92.7
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2573.1 1382 93.1
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2566.6 1383 92.8
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2563.5 1383 92.4
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2558.1 1383 91.8
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2557.7 1383 92.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2557.7 1385 92.3
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2555.8 1383 92.0
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2553.1 1388 92.3
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2552.3 1386 92.1
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2550.8 1388 92.3
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2550.0 1384 92.6
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2549.2 1385 91.6
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2549.2 1382 91.2
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2546.5 1383 92.0
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2546.2 1383 92.5
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2545.0 1382 92.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2544.2 1385 91.2
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2543.5 1384 92.2
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2542.3 1398 91.3
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2541.1 1385 91.8
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2540.8 1382 91.2
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2540.4 1383 92.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2539.2 1384 91.8
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2538.8 1383 91.4
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2538.5 1398 91.0
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2535.8 1384 91.7
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1383 91.5
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2533.1 1383 91.5
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2527.3 1382 91.1
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2527.3 1382 91.7
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2525.0 1384 90.7
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2524.2 1382 90.7
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2523.0 1384 90.9
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2521.9 1382 90.2
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2520.7 1382 90.5
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2520.7 1383 91.0
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2520.0 1383 90.7
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2520.0 1383 90.5
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2516.5 1384 90.5
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2512.3 1385 90.2
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2510.7 1384 90.4
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2510.3 1382 90.3
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2509.6 1382 89.9
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2508.0 1382 91.5
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2507.2 1382 90.0
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2506.9 1382 89.9
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2506.5 1382 89.9
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2505.7 1382 90.0
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2504.9 1382 89.9
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2504.2 1384 90.2
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2502.2 1383 89.6
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1382 89.7
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2501.1 1383 89.5
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2500.3 1382 89.7
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2500.3 1382 89.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2496.1 1384 89.3
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1384 89.8
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2491.5 1384 88.9
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2490.3 1409 88.1
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2489.9 1384 89.4
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2489.5 1384 89.4
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1386 88.7
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1383 89.9
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1382 89.8
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1393 88.7
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1386 88.1
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2463.7 1385 88.1
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2461.0 1446 84.9
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2457.9 1384 88.4
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2452.6 1335 90.9
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2449.5 1383 88.3
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2448.3 1386 88.1
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2445.2 1386 87.9
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2444.1 1383 88.0
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2444.1 1384 87.9
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2441.4 1384 87.9
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2441.4 1386 87.9
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2438.3 1383 87.0
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2437.9 1383 86.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2427.1 1354 88.6
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2423.7 1384 87.1
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2423.7 1384 87.1
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2422.5 1384 87.4
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2418.7 1384 87.0
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2418.7 1384 87.0
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1384 86.9
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2404.8 1385 86.9
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2382.8 1383 86.3
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2376.7 1384 86.0
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2373.6 1382 86.1
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2349.7 1338 86.2
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2342.8 1408 84.2
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2337.0 1258 92.8
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2330.8 1258 93.1
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2312.0 1331 85.3
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2256.5 1261 89.5
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2244.2 1339 84.8
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2217.6 1333 81.3
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2206.4 1331 80.6
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2202.2 1334 80.4
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2186.0 1331 80.2
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2186.0 1331 80.2
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2168.7 1332 79.1
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2006.9 1380 76.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2006.1 1120 88.8
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1985.3 1108 88.8
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1938.7 1400 74.5
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1884.8 1332 69.2
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1851.3 1336 68.5
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1706.4 913 92.4
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1704.9 1382 66.2
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1644.0 898 90.8
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1519.6 809 93.0
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1506.5 808 92.1
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1165.6 690 85.1
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1131.7 675 84.0
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 1.9e-311 1073.2 669 81.8
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 4.6e-301 1038.5 571 87.9
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.6e-267 926.4 590 79.8
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 5.4e-265 918.7 1199 44.5
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 9.5e-238 828.2 470 87.4
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.1e-236 823.2 470 86.8
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 3.7e-234 816.2 471 86.2
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 3.1e-220 770.0 471 83.2
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 5.5e-209 732.6 398 89.7
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 9.7e-174 615.5 1380 32.5
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.7e-160 570.9 1485 30.1
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 9.9e-110 402.9 1275 28.5
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 7.4e-89 333.6 175 94.3
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.5e-65 256.1 147 85.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 7.2e-60 237.3 123 92.7
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.1e-44 186.8 107 89.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.7e-40 172.9 174 57.5
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 1.6e-30 139.8 139 51.1
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.9e-28 132.9 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.4e-26 126.7 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.9e-20 106.3 61 85.2


User provided reference genes

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