Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 3.2e-46 188.3 100 100.0
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 2.4e-33 145.6 100 71.0
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 7.2e-30 134.0 88 72.7
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 1.2e-29 133.3 86 74.4
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 5.7e-27 124.4 83 73.5
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 9.7e-27 123.6 83 71.1
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 9.7e-27 123.6 83 71.1
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 2.2e-26 122.5 76 72.4
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 2.8e-26 122.1 80 70.0
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.8e-26 122.1 83 69.9
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 3.7e-26 121.7 83 69.9
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 4.8e-26 121.3 91 71.4
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 1.4e-25 119.8 76 71.1
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 1.8e-25 119.4 76 71.1
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 1.8e-25 119.4 76 71.1
Cfa016832 Carpinus fangiana HOM05D002914 ORTHO05D003196 2.4e-25 119.0 86 67.4
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 5.3e-25 117.9 81 71.6
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 5.3e-25 117.9 78 73.1
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 7.0e-25 117.5 87 66.7
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 9.1e-25 117.1 76 69.7
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.2e-24 116.7 86 62.8
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.6e-24 116.3 88 67.0
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 4.5e-24 114.8 76 67.1
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.2e-23 112.5 85 67.1
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.9e-23 112.1 86 67.4
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 5.0e-23 111.3 79 65.8
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 6.5e-23 110.9 88 64.8
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.1e-22 110.2 79 65.8
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 1.1e-22 110.2 86 60.5
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.5e-22 107.8 79 65.8
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 5.5e-22 107.8 86 61.6
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 7.2e-22 107.5 81 65.4
Duzib128G0409 Durio zibethinus HOM05D002914 ORTHO05D003196 1.2e-21 106.7 86 61.6
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.2e-21 106.7 74 62.2
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.6e-21 106.3 79 64.6
QL07p000101 Quercus lobata HOM05D002914 ORTHO05D003196 2.1e-21 105.9 102 55.9
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.7e-21 105.5 79 64.6
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.7e-21 105.5 59 79.7
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 3.6e-21 105.1 84 61.9
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 4.7e-21 104.8 80 60.0
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 4.7e-21 104.8 75 68.0
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 6.1e-21 104.4 76 64.5
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 6.1e-21 104.4 83 62.7
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 8.0e-21 104.0 71 70.4
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 1.4e-20 103.2 80 65.0
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 1.8e-20 102.8 81 61.7
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 2.3e-20 102.4 86 62.8
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 6.8e-20 100.9 77 67.5
Sc13g0001830 Simmondsia chinensis HOM05D002914 ORTHO05D003196 8.8e-20 100.5 100 55.0
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 3.4e-19 98.6 73 61.6
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 4.4e-19 98.2 73 61.6
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 4.4e-19 98.2 73 61.6
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 4.4e-19 98.2 73 61.6
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 4.4e-19 98.2 73 61.6
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 9.7e-19 97.1 71 66.2
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.3e-18 96.7 92 53.3
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 1.3e-18 96.7 73 61.6
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 1.3e-18 96.7 73 61.6
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 2.8e-18 95.5 71 64.8
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 3.7e-18 95.1 73 60.3
BcaC08g44849 Brassica carinata HOM05D002914 ORTHO05D003196 3.7e-18 95.1 92 53.3
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 3.7e-18 95.1 58 72.4
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 3.7e-18 95.1 58 72.4
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 8.3e-18 94.0 87 54.0
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.1e-17 93.6 86 53.5
Sabra06G0036900 Salix brachista HOM05D002914 ORTHO05D003196 2.4e-17 92.4 71 66.2
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 2.4e-17 92.4 58 70.7
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 3.1e-17 92.0 86 57.0
HanXRQChr10g0300121 Helianthus annuus HOM05D002914 ORTHO05D003196 3.1e-17 92.0 81 60.5
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.3e-17 91.3 86 55.8
Sp5g05100 Schrenkiella parvula HOM05D002914 ORTHO05D003196 5.3e-17 91.3 71 62.0
A07p23450 Brassica napus HOM05D002914 ORTHO05D003196 9.1e-17 90.5 71 60.6
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 1.2e-16 90.1 73 58.9
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 1.2e-16 90.1 73 58.9
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 1.2e-16 90.1 73 58.9
DCAR_020485 Daucus carota HOM05D002914 ORTHO05D003196 1.3e-15 86.7 89 47.2
CARHR167710 Cardamine hirsuta HOM05D002914 ORTHO05D003196 2.2e-15 85.9 59 66.1
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 3.8e-15 85.1 74 55.4
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 6.5e-15 84.3 79 55.7
ECA247G2219 Erigeron canadensis HOM05D000031 ORTHO05D000003 1.5e-14 83.2 89 49.4
AUR62024432 Chenopodium quinoa HOM05D002914 ORTHO05D003196 2.5e-14 82.4 65 66.2
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 4.2e-14 81.6 56 57.1
Migut.K00083 Erythranthe guttata HOM05D002914 ORTHO05D003196 9.4e-14 80.5 58 72.4
MBI02_g05666_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 1.6e-13 79.7 76 53.9
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 4.7e-13 78.2 82 46.3
Actinidia17240 Actinidia chinensis HOM05D002914 ORTHO05D003196 8.0e-13 77.4 86 46.5
Migut.J01766 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.8e-12 76.3 84 45.2
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 2.3e-12 75.9 76 47.4
arahy.Tifrunner.gnm1.ann1.TRJ4SS Arachis hypogaea HOM05D002914 ORTHO05D003196 7.5e-11 70.9 39 76.9
ClCG04G003270 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.3e-10 70.1 76 55.3
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.3e-10 70.1 74 47.3
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 2.8e-10 68.9 82 46.3
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.8e-10 68.9 81 45.7
MBI04_g44434_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 6.3e-10 67.8 38 65.8
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 8.3e-10 67.4 80 45.0
Atru.ctg24.30 Acer truncatum HOM05D002914 ORTHO05D003196 8.3e-10 67.4 39 74.4
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 1.1e-09 67.0 80 41.2
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.1e-09 67.0 78 47.4
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.1e-09 67.0 78 39.7
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.4e-09 66.6 78 47.4
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.4e-09 66.6 78 47.4
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.8e-09 66.2 79 38.0
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.8e-09 66.2 80 45.0
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.4e-09 65.9 68 42.6
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 3.1e-09 65.5 58 51.7
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 5.4e-09 64.7 74 41.9
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.4e-09 64.7 78 38.5
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 5.4e-09 64.7 47 55.3
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 7.0e-09 64.3 78 41.0
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 7.0e-09 64.3 78 39.7
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 9.1e-09 63.9 80 45.0
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 9.1e-09 63.9 72 41.7
HPP92_023573 Vanilla planifolia HOM05D002914 ORTHO05D003196 9.1e-09 63.9 58 46.6
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 1.2e-08 63.5 74 39.2
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 1.2e-08 63.5 78 39.7
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.6e-08 63.2 79 36.7
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 1.6e-08 63.2 85 40.0
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 1.6e-08 63.2 70 40.0
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.7e-08 62.4 57 52.6
MELO3C023115.2 Cucumis melo HOM05D002914 ORTHO05D003196 4.5e-08 61.6 66 50.0
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 7.7e-08 60.8 91 36.3
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 7.7e-08 60.8 85 38.8
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.7e-08 60.8 76 39.5
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.7e-08 60.8 76 39.5
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 7.7e-08 60.8 78 43.6
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 7.7e-08 60.8 64 39.1
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.0e-07 60.5 74 37.8
CsaV3_4G011800 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.0e-07 60.5 66 48.5
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 1.0e-07 60.5 70 38.6
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 1.7e-07 59.7 89 36.0
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.7e-07 59.7 57 45.6
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.9e-07 58.9 77 37.7
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 3.8e-07 58.5 77 36.4
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 3.8e-07 58.5 76 35.5
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.8e-07 58.5 77 37.7
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.8e-07 58.5 57 42.1
Zm00001eb216960 Zea mays HOM05D002914 ORTHO05D003196 3.8e-07 58.5 84 38.1
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.0e-07 58.2 58 48.3
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.0e-07 58.2 58 48.3
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.0e-07 58.2 58 48.3
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 5.0e-07 58.2 57 43.9
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 6.6e-07 57.8 76 35.5
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 8.6e-07 57.4 68 38.2
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 8.6e-07 57.4 84 36.9
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 8.6e-07 57.4 77 36.4
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 8.6e-07 57.4 80 36.2
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 8.6e-07 57.4 57 42.1
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 1.1e-06 57.0 39 53.8
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.1e-06 57.0 57 42.1
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.5e-06 56.6 85 37.6
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.5e-06 56.6 39 53.8
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.5e-06 56.6 80 35.0
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 1.5e-06 56.6 39 56.4
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 1.9e-06 56.2 79 36.7
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.9e-06 56.2 79 38.0
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.5e-06 55.8 57 45.6
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.5e-06 55.8 71 38.0
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 3.3e-06 55.5 57 42.1
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.3e-06 55.5 81 38.3
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 4.2e-06 55.1 38 55.3
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 4.2e-06 55.1 38 55.3
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 5.5e-06 54.7 68 36.8
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 5.5e-06 54.7 38 52.6
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 5.5e-06 54.7 72 41.7
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 5.5e-06 54.7 39 53.8
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 5.5e-06 54.7 72 40.3
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 5.5e-06 54.7 72 40.3
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 7.2e-06 54.3 80 35.0
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 7.2e-06 54.3 78 35.9
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 7.2e-06 54.3 38 55.3
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 7.2e-06 54.3 38 55.3
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 7.2e-06 54.3 38 55.3
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 7.2e-06 54.3 39 53.8
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 7.2e-06 54.3 57 43.9
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 7.2e-06 54.3 72 40.3
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 7.2e-06 54.3 72 36.1
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 9.5e-06 53.9 60 41.7
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 9.5e-06 53.9 39 53.8
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 9.5e-06 53.9 77 36.4
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 9.5e-06 53.9 51 45.1
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 9.5e-06 53.9 78 38.5


User provided reference genes

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