Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 3.5e-182 643.3 819 100.0
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.8e-93 348.6 817 80.8
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 2.3e-93 348.2 819 81.4
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.2e-92 345.9 819 81.6
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 8.6e-88 329.7 815 81.1
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 9.5e-87 326.2 808 81.8
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.4e-85 322.4 817 79.6
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 6.8e-85 320.1 249 67.1
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.3e-83 315.8 256 64.1
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.3e-83 315.8 254 63.8
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.2e-83 315.1 818 78.2
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 2.9e-83 314.7 818 78.4
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.6e-80 303.5 255 63.5
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.5e-79 302.4 257 62.3
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 4.7e-78 297.4 241 65.1
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.7e-78 297.4 818 77.1
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 6.8e-77 293.5 252 59.5
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 8.9e-77 293.1 256 59.8
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 8.3e-75 286.6 779 81.0
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.2e-73 282.7 760 81.4
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.3e-72 278.5 257 59.5
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 3.0e-72 278.1 262 56.9
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.1e-71 276.2 778 79.9
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 2.5e-71 275.0 249 59.4
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 3.3e-71 274.6 748 83.0
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 4.3e-71 274.2 256 57.4
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 5.6e-71 273.9 250 60.4
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 2.8e-70 271.6 819 77.9
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 3.1e-69 268.1 760 81.1
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 5.2e-69 267.3 821 76.5
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.8e-69 266.9 760 68.7
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.8e-69 266.9 197 65.5
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 7.6e-68 263.5 778 79.3
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.7e-67 262.3 223 59.2
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.9e-67 261.5 745 82.6
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 4.9e-67 260.8 232 59.1
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-66 259.6 248 56.5
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.1e-66 259.6 246 57.7
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.4e-66 258.5 249 55.4
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 9.2e-66 256.5 255 55.3
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 3.5e-65 254.6 820 76.3
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 4.6e-65 254.2 218 61.0
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 6.0e-65 253.8 242 57.0
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.0e-64 253.1 234 58.1
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 1.3e-64 252.7 823 76.5
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.3e-64 251.9 212 59.4
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 3.0e-64 251.5 824 76.9
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-63 249.2 186 68.8
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 1.5e-63 249.2 819 76.7
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.9e-63 248.8 258 53.9
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 2.5e-63 248.4 210 60.5
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 5.6e-63 247.3 255 55.3
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.3e-62 246.1 827 76.9
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 2.1e-62 245.4 257 52.1
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 2.8e-62 245.0 246 54.9
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 8.1e-62 243.4 824 75.0
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-61 242.3 229 58.1
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 2.4e-61 241.9 217 57.6
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 5.3e-61 240.7 185 64.3
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 6.9e-61 240.4 259 50.2
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 6.9e-61 240.4 267 51.7
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.2e-60 239.6 202 59.4
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-60 239.2 230 58.3
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 2.0e-60 238.8 247 51.8
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 2.9e-59 235.0 195 63.1
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 3.8e-59 234.6 250 52.8
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 3.8e-59 234.6 300 47.3
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 4.9e-59 234.2 176 65.9
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 8.4e-59 233.4 245 55.5
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.4e-59 233.4 152 75.0
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.4e-59 233.4 152 75.0
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 8.4e-59 233.4 296 47.0
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 4.2e-58 231.1 209 58.4
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 7.1e-58 230.3 219 55.3
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.0e-57 227.3 202 61.4
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.0e-57 227.3 192 62.0
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 6.0e-57 227.3 267 49.8
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 7.8e-57 226.9 265 48.3
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.7e-56 225.7 253 51.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 2.3e-56 225.3 177 63.3
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 3.3e-55 221.5 216 53.2
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.6e-54 219.2 249 52.6
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 5.4e-50 204.1 193 56.5
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.5e-47 196.1 232 51.3
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 3.3e-47 194.9 120 80.8
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 2.8e-46 191.8 226 52.2
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 4.8e-46 191.0 146 61.6
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 8.1e-46 190.3 171 54.4
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 6.9e-45 187.2 690 84.1
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 1.5e-44 186.0 225 50.2
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 2.0e-44 185.7 241 46.1
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 2.2e-43 182.2 229 47.2
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 2.9e-43 181.8 232 47.4
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 4.9e-43 181.0 184 52.7
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 6.5e-43 180.6 147 55.1
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 8.4e-43 180.3 148 57.4
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 8.4e-43 180.3 127 70.9
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.4e-42 179.5 223 47.5
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.4e-42 179.5 223 47.5
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.2e-42 178.3 186 54.3
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 3.2e-42 178.3 202 50.0
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.2e-42 177.9 136 66.9
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.2e-41 176.4 173 56.1
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 1.6e-41 176.0 148 60.1
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 2.7e-41 175.3 226 46.9
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.3e-40 172.9 148 54.7
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.9e-40 171.4 161 55.3
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 8.7e-40 170.2 114 73.7
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.5e-39 169.5 221 47.1
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.6e-38 166.0 211 48.8
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 2.8e-38 165.2 148 56.8
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 9.0e-37 160.2 219 45.2
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 9.0e-37 160.2 219 46.1
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.1e-34 153.3 179 45.8
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.9e-34 152.5 217 43.8
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.2e-34 151.8 217 43.3
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 6.1e-33 147.5 144 49.3
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 6.7e-32 144.1 222 40.1
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 8.7e-32 143.7 146 47.9
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.9e-31 142.5 148 48.6
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.2e-30 139.0 128 51.6
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 4.8e-30 137.9 131 51.1
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 4.1e-29 134.8 207 44.4
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 1.0e-27 130.2 215 40.5
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.0e-27 127.9 109 54.1
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.1e-26 126.7 168 45.8
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.4e-21 109.8 138 41.3
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.0e-20 105.9 129 44.2
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.4e-13 83.2 156 38.5
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 5.5e-10 71.2 45 80.0
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 4.4e-07 61.6 169 29.0
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 7.4e-07 60.8 152 27.0
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 4.8e-06 58.2 150 28.7
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 4.8e-06 58.2 179 26.8
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 6.3e-06 57.8 181 26.0
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 6.3e-06 57.8 169 27.2
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 8.2e-06 57.4 163 26.4


User provided reference genes

Program Settings