Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.7e-123 446.0 224 100.0
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.6e-116 422.2 224 93.8
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.2e-84 317.0 225 68.0
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 9.2e-82 307.4 221 67.9
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 4.6e-81 305.1 221 67.0
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 2.3e-80 302.8 222 66.7
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 6.6e-80 301.2 221 65.6
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 6.6e-80 301.2 224 65.2
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 8.6e-80 300.8 221 65.6
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.1e-79 300.4 221 67.9
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.9e-79 299.7 221 65.2
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.9e-79 299.7 221 65.6
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 2.5e-79 299.3 219 66.7
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 2.5e-79 299.3 219 68.0
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 4.3e-79 298.5 221 66.5
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.3e-79 297.7 221 66.1
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.3e-79 297.7 221 66.1
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.1e-78 296.2 221 66.5
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.1e-78 296.2 221 66.1
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 2.8e-78 295.8 221 67.0
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 2.8e-78 295.8 221 67.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 1.0e-77 293.9 221 65.2
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.0e-77 293.9 221 63.3
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.3e-77 292.7 221 63.3
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.3e-77 292.7 221 65.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 3.1e-77 292.4 216 66.7
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 4.0e-77 292.0 221 64.7
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 4.0e-77 292.0 221 65.6
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 6.8e-77 291.2 221 65.2
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 8.9e-77 290.8 214 66.8
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.2e-76 290.4 221 64.7
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.5e-76 290.0 221 65.2
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.5e-76 290.0 220 65.5
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 2.0e-76 289.7 220 63.2
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.0e-76 289.7 221 63.3
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 2.6e-76 289.3 220 63.2
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 2.6e-76 289.3 221 63.3
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 2.6e-76 289.3 221 62.9
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.6e-76 289.3 221 63.8
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 3.4e-76 288.9 221 63.3
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 4.4e-76 288.5 221 63.3
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 4.4e-76 288.5 226 63.3
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 5.8e-76 288.1 221 63.3
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 5.8e-76 288.1 216 65.7
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 7.5e-76 287.7 210 65.7
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 9.8e-76 287.3 221 62.9
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 9.8e-76 287.3 221 62.9
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 9.8e-76 287.3 221 60.6
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.3e-75 287.0 221 62.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.7e-75 286.6 222 61.3
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.7e-75 286.6 221 63.3
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.2e-75 286.2 223 61.0
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 2.2e-75 286.2 222 62.6
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.2e-75 286.2 221 64.3
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 2.9e-75 285.8 220 64.1
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.7e-75 285.4 221 65.2
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 3.7e-75 285.4 222 63.5
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 3.7e-75 285.4 210 64.8
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.9e-75 285.0 221 64.7
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 4.9e-75 285.0 222 61.7
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 4.9e-75 285.0 220 65.0
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 8.3e-75 284.3 221 60.2
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 8.3e-75 284.3 220 65.0
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.1e-74 283.9 221 61.5
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.1e-74 283.9 215 63.7
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.4e-74 282.7 222 62.2
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.2e-74 282.3 222 62.2
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.2e-74 282.3 218 61.5
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 4.1e-74 282.0 221 61.5
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 5.4e-74 281.6 222 60.4
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 9.2e-74 280.8 231 61.5
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.2e-73 280.4 210 64.3
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.2e-73 280.4 215 64.7
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.2e-73 280.4 221 61.5
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.6e-73 280.0 221 62.0
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.6e-73 280.0 221 62.0
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.6e-73 280.0 223 61.0
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 2.0e-73 279.6 220 64.1
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 3.5e-73 278.9 216 65.3
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 4.6e-73 278.5 220 61.8
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 4.6e-73 278.5 220 64.5
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 6.0e-73 278.1 211 63.5
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 6.0e-73 278.1 221 61.1
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 6.0e-73 278.1 221 61.1
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 1.7e-72 276.6 219 61.2
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.3e-72 276.2 221 59.7
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 2.3e-72 276.2 221 61.1
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 3.0e-72 275.8 221 61.1
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.0e-72 275.8 231 60.6
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 3.0e-72 275.8 231 60.6
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 5.0e-72 275.0 224 61.2
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 6.6e-72 274.6 220 60.5
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 6.6e-72 274.6 224 59.4
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 8.6e-72 274.2 219 60.3
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.1e-71 273.9 221 60.6
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.1e-71 273.9 221 60.6
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.5e-71 273.5 222 63.1
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.5e-71 273.5 221 61.1
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-71 273.5 245 56.7
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.9e-71 273.1 220 59.5
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.5e-71 272.7 222 60.4
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 7.3e-71 271.2 221 60.6
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.1e-70 269.6 220 61.8
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.8e-70 269.2 221 60.6
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.4e-69 266.9 219 58.9
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.3e-69 266.2 232 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 6.8e-69 264.6 221 57.5
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.2e-68 263.8 219 58.4
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.4e-68 262.3 219 58.4
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 9.8e-68 260.8 219 56.6
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.2e-67 259.6 219 57.1
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.9e-67 259.2 219 57.1
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.4e-66 256.1 210 58.6
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 5.4e-66 255.0 221 58.8
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 1.6e-65 253.4 212 56.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 4.6e-65 251.9 221 54.8
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 6.0e-65 251.5 322 44.7
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.5e-63 246.9 221 57.5
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 3.3e-63 245.7 308 45.5
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.6e-62 243.4 223 56.1
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 1.1e-61 240.7 223 54.7
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 2.4e-58 229.6 353 38.8
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 2.7e-57 226.1 175 64.0
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 8.6e-56 221.1 152 69.1
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 3.6e-54 215.7 151 66.2
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.8e-53 213.4 176 59.7
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 5.2e-53 211.8 152 65.1
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 2.4e-50 203.0 151 62.9
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 3.0e-48 196.1 166 60.2
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 6.9e-45 184.9 123 69.9
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 1.5e-44 183.7 130 70.0
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 2.0e-44 183.3 139 62.6
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 7.9e-41 171.4 198 48.0
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 1.0e-40 171.0 107 73.8
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 3.1e-37 159.5 110 67.3
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 3.1e-37 159.5 110 67.3
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.7e-35 153.7 203 40.9
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 6.4e-35 151.8 99 69.7
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.4e-34 150.6 221 41.2
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 3.9e-32 142.5 115 62.6
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.9e-31 140.2 95 66.3
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.3e-30 137.5 116 58.6
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 9.0e-29 131.3 116 55.2
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 2.0e-28 130.2 116 58.6
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.1e-26 124.4 87 70.1
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 7.9e-25 118.2 140 47.9
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 5.9e-20 102.1 81 60.5
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.2e-19 100.1 105 51.4
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.6e-17 92.8 78 61.5
MCO08G354 Micromonas commoda HOM05D004698 ORTHO05D005699 6.1e-17 92.0 201 29.4
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 3.0e-16 89.7 125 45.6
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 4.3e-15 85.9 57 77.2
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 5.9e-12 75.5 61 60.7
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 7.4e-07 58.5 48 60.4


User provided reference genes

Program Settings