Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.5e-104 382.9 193 100.0
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.0e-73 278.9 198 77.3
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.8e-65 253.1 201 67.7
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 6.3e-63 244.6 199 66.8
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.6e-58 229.9 202 63.4
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 8.0e-58 227.6 205 62.0
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.4e-57 226.9 202 61.9
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-57 226.5 205 60.5
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.3e-57 226.1 205 62.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 3.3e-56 222.2 208 62.5
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 7.0e-54 214.5 207 59.9
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.0e-54 214.5 200 60.5
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.0e-53 213.0 202 60.9
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.5e-53 212.2 208 58.2
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.5e-53 212.2 202 60.9
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.7e-52 209.9 203 57.6
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.2e-52 209.5 191 61.3
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.0e-52 208.4 200 59.5
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.5e-51 206.8 192 58.9
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.2e-51 205.7 200 59.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 7.2e-51 204.5 212 56.6
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.6e-50 203.4 211 58.3
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.1e-50 203.0 216 56.5
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.7e-50 202.6 216 56.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 4.7e-50 201.8 183 61.7
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.1e-50 201.4 216 56.0
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-49 200.3 216 56.0
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 4.0e-49 198.7 216 55.6
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.0e-49 198.7 216 55.6
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.0e-49 198.7 216 55.6
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.8e-49 198.0 208 54.8
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.8e-49 197.6 208 54.8
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.5e-48 196.8 208 54.8
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.2e-47 193.0 191 59.7
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.8e-47 192.6 174 58.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 6.3e-47 191.4 201 54.7
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 3.1e-46 189.1 178 61.8
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 7.0e-46 188.0 204 54.9
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 9.1e-46 187.6 202 55.9
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 9.1e-46 187.6 200 58.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.2e-45 187.2 203 51.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 4.5e-45 185.3 185 55.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 4.5e-45 185.3 206 53.9
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 7.7e-45 184.5 207 54.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.0e-44 184.1 201 51.2
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.9e-44 182.6 170 57.6
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.5e-43 180.3 198 53.5
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.9e-43 179.9 229 48.5
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.9e-43 179.9 212 51.4
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.1e-42 176.4 208 51.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 3.6e-42 175.6 215 48.8
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 8.0e-42 174.5 205 49.3
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.0e-41 174.1 175 54.3
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.0e-41 174.1 198 53.0
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 6.8e-41 171.4 200 50.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 6.8e-41 171.4 199 52.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.2e-40 170.6 211 51.2
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.5e-40 170.2 215 49.3
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.4e-40 169.1 201 47.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.4e-40 169.1 209 49.3
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.4e-40 169.1 196 54.1
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 4.4e-40 168.7 208 50.5
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 5.7e-40 168.3 204 50.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 9.8e-40 167.5 211 47.9
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 9.8e-40 167.5 201 51.7
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.3e-39 167.2 204 48.5
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-39 167.2 192 49.5
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.8e-39 166.0 208 50.0
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.4e-38 163.7 186 51.6
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.4e-38 163.7 196 51.0
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.8e-38 163.3 208 46.6
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.1e-38 162.5 199 51.3
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.1e-38 162.2 182 51.6
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.4e-38 161.8 179 57.5
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.4e-38 161.8 200 51.0
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 7.0e-38 161.4 194 52.1
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.2e-37 160.6 208 45.7
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.2e-37 160.6 207 50.2
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.6e-37 160.2 199 48.7
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.0e-37 159.8 213 46.9
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.0e-37 159.8 202 51.5
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 2.0e-37 159.8 204 50.0
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.0e-37 159.8 193 48.2
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.7e-37 159.5 203 48.8
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.5e-37 159.1 180 55.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 5.9e-37 158.3 221 46.2
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.7e-36 156.8 202 50.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-36 156.0 179 50.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 3.8e-36 155.6 178 50.0
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 5.0e-36 155.2 176 50.0
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.1e-35 154.1 197 45.7
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.1e-35 154.1 179 49.2
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-35 153.7 176 50.0
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.5e-35 152.9 236 46.2
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.5e-35 152.9 196 49.0
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 4.2e-35 152.1 196 48.5
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-35 151.8 168 50.6
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.2e-35 151.4 175 51.4
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 9.5e-35 151.0 167 50.9
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.6e-34 150.2 167 50.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.8e-34 149.4 207 47.8
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.6e-34 149.1 181 49.2
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 4.7e-34 148.7 211 46.0
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 4.7e-34 148.7 205 45.9
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 8.0e-34 147.9 175 49.1
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.0e-33 146.0 195 45.1
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 5.2e-33 145.2 187 46.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.2e-33 145.2 203 46.3
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 6.8e-33 144.8 201 43.3
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.9e-33 144.4 171 50.3
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 8.9e-33 144.4 189 46.6
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-32 143.7 202 44.6
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.5e-32 143.7 208 46.6
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-32 143.3 174 47.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.0e-32 143.3 201 47.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 3.4e-32 142.5 193 45.6
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 3.4e-32 142.5 198 43.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.4e-32 142.1 210 43.3
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.7e-32 141.7 189 45.5
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 5.7e-32 141.7 175 49.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 7.5e-32 141.4 170 49.4
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.8e-32 141.0 206 44.7
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-31 140.6 218 40.4
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.7e-31 140.2 112 65.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.2e-31 139.8 204 42.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.7e-31 139.0 174 46.6
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.7e-31 139.0 178 47.8
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.9e-31 138.7 190 43.2
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 4.9e-31 138.7 165 48.5
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.3e-31 138.3 196 49.5
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.3e-31 138.3 196 49.5
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.1e-30 137.5 171 48.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-30 137.5 151 48.3
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 3.2e-30 136.0 189 45.0
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 4.1e-30 135.6 166 47.6
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 7.0e-30 134.8 168 47.0
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 7.0e-30 134.8 194 46.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 9.2e-30 134.4 187 44.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.6e-29 133.7 133 54.9
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 2.0e-29 133.3 154 49.4
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.0e-29 133.3 187 42.8
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.7e-29 132.9 187 44.4
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.0e-28 131.0 186 41.9
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-28 131.0 165 44.8
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 2.3e-28 129.8 195 41.0
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 2.3e-28 129.8 195 41.0
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-28 129.4 196 40.8
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.9e-28 129.4 122 57.4
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.0e-28 128.6 160 48.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.5e-27 126.3 157 47.1
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.1e-26 123.2 194 42.8
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 4.7e-26 122.1 200 43.0
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 8.0e-26 121.3 197 46.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.0e-25 120.9 153 47.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 6.8e-25 118.2 140 47.1
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.0e-24 116.7 175 44.0
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.6e-24 116.3 139 47.5
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.8e-24 115.2 197 40.6
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 7.5e-24 114.8 139 47.5
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.7e-23 113.6 186 43.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 3.7e-23 112.5 177 42.9
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.1e-22 109.0 159 44.0
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.1e-22 109.0 177 41.8
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.7e-21 106.3 116 51.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.3e-20 104.0 165 41.2
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-20 104.0 100 60.0
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-20 103.2 182 40.7
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-20 102.8 182 40.7
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 3.9e-20 102.4 182 40.7
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.9e-20 102.4 106 50.9
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 6.6e-20 101.7 165 39.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 8.6e-20 101.3 175 40.6
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 4.3e-19 99.0 183 37.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.6e-19 98.6 183 40.4
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 7.3e-19 98.2 175 40.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.6e-18 95.9 176 39.2
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.0e-17 92.4 194 37.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 6.4e-15 85.1 280 30.4
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.1e-14 84.3 115 43.5
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.4e-14 84.0 95 49.5
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.1e-10 70.1 135 37.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.8e-09 67.0 68 52.9
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.5e-08 63.9 205 29.8
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 3.4e-08 62.8 161 32.9


User provided reference genes

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