Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.8e-79 299.3 158 100.0
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 3.2e-41 172.2 156 66.0
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 3.7e-29 132.1 162 53.7
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 6.4e-29 131.3 160 56.9
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 4.1e-28 128.6 161 53.4
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.6e-27 126.7 159 54.7
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 3.5e-27 125.6 159 53.5
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 3.5e-27 125.6 145 55.2
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 4.6e-27 125.2 158 58.2
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 1.0e-26 124.0 158 54.4
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 1.3e-26 123.6 158 52.5
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 1.7e-26 123.2 162 53.1
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.9e-25 119.8 159 53.5
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 1.9e-25 119.8 160 52.5
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 3.3e-25 119.0 160 51.2
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.3e-25 119.0 159 49.7
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 4.3e-25 118.6 157 52.2
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.3e-25 118.6 162 51.9
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 5.6e-25 118.2 158 53.2
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 1.2e-24 117.1 161 49.7
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 3.6e-24 115.5 159 52.8
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 4.7e-24 115.2 162 48.8
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 6.2e-24 114.8 158 51.3
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 8.0e-24 114.4 160 51.9
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 8.0e-24 114.4 163 50.9
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.0e-23 114.0 162 50.6
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 1.8e-23 113.2 159 50.3
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.3e-23 112.8 156 51.3
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 2.3e-23 112.8 125 56.8
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 4.0e-23 112.1 161 53.4
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 8.9e-23 110.9 162 50.0
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 1.2e-22 110.5 162 51.2
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 1.5e-22 110.2 164 47.6
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 4.4e-22 108.6 177 46.9
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 7.5e-22 107.8 160 48.8
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 7.5e-22 107.8 145 53.1
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.3e-21 107.1 161 46.0
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.7e-21 106.7 160 48.8
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 2.2e-21 106.3 159 48.4
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 8.3e-21 104.4 155 50.3
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 1.1e-20 104.0 168 48.2
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 1.4e-20 103.6 143 51.0
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 2.4e-20 102.8 160 45.6
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.2e-20 102.4 160 46.9
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 5.4e-20 101.7 160 46.2
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 5.4e-20 101.7 160 46.2
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 1.6e-19 100.1 159 46.5
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 3.5e-19 99.0 157 47.1
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.3e-18 97.1 159 45.3
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 1.7e-18 96.7 119 52.9
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 5.0e-18 95.1 138 50.0
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 6.6e-18 94.7 160 42.5
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 1.1e-17 94.0 114 57.0
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 1.5e-17 93.6 95 63.2
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 1.5e-17 93.6 170 46.5
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.5e-17 92.8 143 49.7
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.5e-17 92.8 161 45.3
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 4.3e-17 92.0 97 58.8
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 4.3e-17 92.0 101 56.4
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 5.6e-17 91.7 87 67.8
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 7.3e-17 91.3 123 51.2
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 9.5e-17 90.9 162 45.7
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.2e-16 90.5 161 49.7
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 1.6e-16 90.1 150 46.0
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.1e-16 89.7 140 50.7
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 2.1e-16 89.7 82 63.4
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 8.1e-16 87.8 141 47.5
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.4e-15 87.0 160 48.1
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 1.8e-15 86.7 150 45.3
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.8e-15 86.7 128 45.3
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 1.8e-15 86.7 89 62.9
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 2.3e-15 86.3 159 41.5
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.3e-15 86.3 156 41.7
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 2.3e-15 86.3 89 61.8
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 3.1e-15 85.9 135 45.9
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.1e-15 85.9 126 50.8
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 4.0e-15 85.5 113 52.2
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 5.2e-15 85.1 141 44.0
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 4.4e-14 82.0 151 45.0
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 5.8e-14 81.6 169 42.6
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 5.8e-14 81.6 126 46.0
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 7.5e-14 81.3 129 46.5
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 7.5e-14 81.3 158 43.0
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 7.5e-14 81.3 158 43.0
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 7.5e-14 81.3 102 52.0
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 1.3e-13 80.5 95 56.8
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 1.7e-13 80.1 73 64.4
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 1.7e-13 80.1 160 43.1
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 1.7e-13 80.1 160 42.5
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 1.7e-13 80.1 160 43.1
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.7e-13 80.1 125 49.6
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 1.7e-13 80.1 92 53.3
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 2.2e-13 79.7 158 42.4
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 2.2e-13 79.7 124 47.6
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 2.2e-13 79.7 86 59.3
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 2.9e-13 79.3 129 46.5
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 2.9e-13 79.3 102 52.9
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 2.9e-13 79.3 110 50.9
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 3.7e-13 79.0 97 54.6
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 4.9e-13 78.6 104 51.0
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 4.9e-13 78.6 164 42.7
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 4.9e-13 78.6 72 63.9
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 4.9e-13 78.6 128 46.9
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 8.3e-13 77.8 97 53.6
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 8.3e-13 77.8 76 59.2
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 1.1e-12 77.4 160 42.5
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.1e-12 77.4 101 51.5
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.4e-12 76.3 70 62.9
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 4.1e-12 75.5 73 60.3
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.1e-12 75.5 68 61.8
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 7.1e-12 74.7 73 58.9
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 7.1e-12 74.7 94 57.4
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 7.1e-12 74.7 71 62.0
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 7.1e-12 74.7 116 48.3
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 1.2e-11 73.9 160 40.6
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.2e-11 73.9 76 57.9
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.6e-11 73.6 109 48.6
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 1.6e-11 73.6 95 56.8
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 2.1e-11 73.2 141 44.7
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 2.1e-11 73.2 175 39.4
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 2.7e-11 72.8 160 41.9
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 2.7e-11 72.8 160 41.9
Dinv24076 Davidia involucrata HOM05D003436 ORTHO05D003674 3.5e-11 72.4 123 44.7
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 6.0e-11 71.6 87 57.5
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 7.8e-11 71.2 102 52.0
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 7.8e-11 71.2 78 55.1
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 1.0e-10 70.9 80 55.0
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.0e-10 70.9 102 49.0
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 3.0e-10 69.3 93 53.8
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 3.9e-10 68.9 160 38.1
Manes.09G034800 Manihot esculenta HOM05D003436 ORTHO05D003674 5.1e-10 68.6 98 50.0
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 6.6e-10 68.2 118 50.0
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 8.6e-10 67.8 127 40.9
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 8.6e-10 67.8 65 60.0
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.1e-09 67.4 102 47.1
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.1e-09 67.4 129 45.0
HanXRQChr02g0048381 Helianthus annuus HOM05D003436 ORTHO05D003674 1.9e-09 66.6 122 41.0
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.9e-09 66.6 89 53.9
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 2.5e-09 66.2 92 53.3
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.3e-09 65.9 59 61.0
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.3e-09 65.9 59 61.0
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 3.3e-09 65.9 164 39.6
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 3.3e-09 65.9 164 39.6
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 4.3e-09 65.5 160 41.2
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 5.6e-09 65.1 137 44.5
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 5.6e-09 65.1 68 55.9
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 5.6e-09 65.1 68 55.9
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 7.3e-09 64.7 160 40.0
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 9.5e-09 64.3 87 48.3
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 9.5e-09 64.3 82 50.0
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 1.2e-08 63.9 86 54.7
TPR.G27779 Trifolium pratense HOM05D003436 ORTHO05D003674 1.2e-08 63.9 133 39.8
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 1.6e-08 63.5 98 44.9
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 1.6e-08 63.5 94 46.8
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 2.8e-08 62.8 160 40.6
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 2.8e-08 62.8 125 44.8
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 2.8e-08 62.8 127 40.2
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.6e-08 62.4 51 62.7
Cfa020171 Carpinus fangiana HOM05D003436 ORTHO05D003674 3.6e-08 62.4 152 36.2
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 8.1e-08 61.2 86 50.0
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 1.1e-07 60.8 88 52.3
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 1.8e-07 60.1 85 51.8
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.3e-07 59.7 88 51.1
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 2.3e-07 59.7 107 43.9
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 3.1e-07 59.3 134 44.8
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 3.1e-07 59.3 98 42.9
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 6.8e-07 58.2 73 50.7
ECA247G3621 Erigeron canadensis HOM05D003436 ORTHO05D003674 6.8e-07 58.2 42 73.8
CSS0008876 Camellia sinensis var. sinensis HOM05D003436 ORTHO05D003674 1.2e-06 57.4 121 39.7
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 3.4e-06 55.8 98 46.9
Actinidia32390 Actinidia chinensis HOM05D003436 ORTHO05D003674 9.9e-06 54.3 99 43.4


User provided reference genes

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