Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 2.4e-270 934.9 455 100.0
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.6e-224 781.9 440 85.5
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 9.8e-224 780.0 440 84.8
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 9.8e-224 780.0 443 85.1
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 1.3e-223 779.6 443 83.7
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.9e-223 778.5 440 84.1
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.6e-221 772.7 442 82.4
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 6.6e-220 767.3 440 82.5
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.5e-219 766.1 440 83.2
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 1.9e-219 765.8 439 82.9
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 1.2e-218 763.1 439 82.9
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 1.6e-218 762.7 440 82.3
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 1.6e-218 762.7 443 81.0
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.6e-218 762.7 437 84.2
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.1e-218 762.3 440 82.3
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 2.8e-218 761.9 440 81.6
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 4.0e-217 758.1 439 81.1
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 4.0e-217 758.1 443 82.2
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 6.8e-217 757.3 443 81.7
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.0e-216 755.7 440 82.5
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 2.0e-216 755.7 437 81.5
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 2.0e-216 755.7 443 81.3
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 5.8e-216 754.2 438 82.2
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 9.8e-216 753.4 440 82.7
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 2.2e-215 752.3 438 83.1
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.4e-214 749.6 429 82.1
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 2.4e-214 748.8 437 81.9
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 5.4e-214 747.7 441 80.3
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 9.2e-214 746.9 443 80.1
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.6e-213 746.1 432 81.5
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.7e-213 745.3 440 81.6
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 6.0e-213 744.2 441 79.8
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.3e-212 743.0 457 78.3
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 3.0e-212 741.9 443 79.5
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 9.5e-211 736.9 432 80.3
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 2.8e-210 735.3 442 81.0
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.4e-209 733.0 436 79.4
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 1.4e-209 733.0 439 79.3
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.8e-209 732.6 437 79.2
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 3.1e-209 731.9 434 80.2
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 4.0e-209 731.5 441 78.5
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 1.7e-207 726.1 440 76.8
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.7e-207 726.1 429 79.7
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 8.3e-207 723.8 439 77.7
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.9e-206 722.6 446 76.2
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 3.2e-206 721.8 437 78.5
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 3.2e-206 721.8 437 77.6
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 4.1e-206 721.5 445 78.7
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 5.4e-206 721.1 437 78.7
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 5.4e-206 721.1 441 77.1
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 9.2e-206 720.3 437 78.3
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 9.2e-206 720.3 440 78.2
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 9.2e-206 720.3 439 78.1
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 2.7e-205 718.8 426 80.3
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 1.0e-204 716.8 438 78.3
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.7e-204 716.1 432 78.5
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 2.3e-204 715.7 439 77.4
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.0e-204 715.3 453 75.3
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 3.9e-204 714.9 437 78.0
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 3.9e-204 714.9 436 79.6
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.5e-203 713.0 444 76.6
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 5.6e-203 711.1 443 76.3
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 7.3e-203 710.7 446 76.7
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 9.5e-203 710.3 438 77.9
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 3.6e-202 708.4 437 75.5
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 4.7e-202 708.0 396 84.3
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 8.1e-202 707.2 443 75.2
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 4.0e-201 704.9 423 80.1
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 5.2e-201 704.5 437 77.8
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.4e-200 701.8 441 76.2
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.3e-199 699.9 427 77.5
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 2.9e-199 698.7 417 79.4
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 7.1e-198 694.1 421 79.1
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 3.5e-197 691.8 421 79.1
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 7.8e-197 690.6 431 77.0
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.0e-196 690.3 432 75.7
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.3e-196 689.9 438 75.8
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.3e-196 689.1 442 75.8
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 8.6e-196 687.2 451 73.8
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.5e-195 685.6 423 77.1
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.2e-194 683.3 454 74.4
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.2e-194 683.3 467 71.5
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 8.1e-194 680.6 414 78.0
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.4e-193 679.9 438 74.9
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 3.8e-191 671.8 427 75.4
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 3.5e-189 665.2 432 72.5
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.3e-188 662.5 421 76.2
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 5.1e-188 661.4 499 67.5
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.4e-185 653.3 434 71.2
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 2.1e-181 639.4 473 68.3
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 2.7e-181 639.0 445 71.7
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 4.3e-179 631.7 408 74.5
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 2.4e-177 625.9 477 66.7
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 4.0e-177 625.2 434 68.4
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.2e-173 613.6 421 72.0
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.6e-173 611.7 441 65.8
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 5.6e-171 604.7 540 59.8
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 4.8e-170 601.7 364 79.4
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.1e-169 600.5 479 62.0
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 5.3e-169 598.2 396 73.2
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 6.9e-169 597.8 440 68.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 3.2e-166 589.0 360 80.6
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 2.3e-164 582.8 375 72.8
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.2e-157 560.5 437 64.1
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 2.6e-152 542.7 442 60.0
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 1.0e-151 540.8 441 58.3
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 1.3e-151 540.4 424 62.5
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 5.0e-151 538.5 467 59.5
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.6e-149 533.5 435 57.7
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 3.6e-149 532.3 421 63.4
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.2e-140 501.9 430 56.5
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 1.5e-134 483.8 435 54.9
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 2.2e-127 459.9 410 55.9
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.7e-125 453.0 268 78.7
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 3.4e-115 419.5 244 79.9
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.9e-110 403.7 244 82.0
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 5.8e-99 365.5 280 65.4
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 6.4e-98 362.1 199 83.4
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 4.1e-97 359.4 196 84.2
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 2.7e-96 356.7 449 43.2
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.7e-95 354.0 385 44.2
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 4.7e-93 345.9 513 37.8
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.8e-92 344.0 243 72.4
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.1e-65 255.0 155 79.4
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 4.2e-65 253.1 197 67.0
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.3e-53 214.9 227 48.0
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 5.8e-51 206.1 419 32.5
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 6.5e-50 202.6 246 46.3
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 3.5e-48 196.8 184 56.0
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 9.0e-44 182.2 141 61.7
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 5.9e-43 179.5 152 57.9
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 1.2e-40 171.8 187 49.7
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.2e-40 171.8 113 67.3
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 6.1e-40 169.5 95 76.8
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.4e-36 157.5 132 57.6
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 2.9e-34 150.6 145 53.8
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.6e-32 144.8 96 67.7
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 1.4e-31 141.7 86 70.9
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 6.7e-31 139.4 125 56.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 5.3e-28 129.8 125 56.0
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 6.5e-26 122.9 173 42.8
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.5e-22 111.7 126 47.6
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 8.2e-21 105.9 97 54.6
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 3.8e-18 97.1 67 73.1
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 7.2e-17 92.8 66 63.6
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.2e-14 85.5 65 67.7
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.2e-13 81.3 188 33.0
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.4e-12 78.6 67 59.7
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 1.5e-09 68.6 55 60.0
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 1.5e-09 68.6 55 60.0
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 2.5e-09 67.8 82 45.1
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 3.2e-09 67.4 53 60.4
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 4.7e-08 63.5 51 60.8
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.0e-07 60.8 57 50.9
A08p00430 Brassica napus HOM05D004472 ORTHO05D033033 9.8e-06 55.8 63 47.6
C06p10840 Brassica napus HOM05D004472 ORTHO05D033033 9.8e-06 55.8 63 47.6


User provided reference genes

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