Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 1.9e-70 269.2 156 100.0
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 1.8e-36 156.4 155 63.2
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 3.1e-36 155.6 155 60.0
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 3.9e-31 138.7 157 63.1
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 5.1e-31 138.3 147 57.8
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 2.5e-30 136.0 88 79.5
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 1.7e-29 133.3 155 52.9
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 4.8e-29 131.7 153 53.6
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 6.3e-29 131.3 149 53.7
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 6.3e-29 131.3 151 53.6
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 8.2e-29 131.0 148 57.4
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 1.8e-28 129.8 146 56.2
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 6.9e-28 127.9 165 48.5
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 1.5e-27 126.7 156 53.2
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 1.5e-27 126.7 145 53.1
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 2.0e-27 126.3 155 54.8
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 2.6e-27 125.9 144 51.4
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 3.4e-27 125.6 156 53.8
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 4.5e-27 125.2 155 51.0
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 7.7e-27 124.4 152 50.0
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 7.7e-27 124.4 150 54.7
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 1.0e-26 124.0 145 52.4
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 1.7e-26 123.2 160 55.0
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 2.9e-26 122.5 146 54.1
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 1.1e-25 120.6 148 50.7
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 1.9e-25 119.8 161 52.2
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 2.5e-25 119.4 144 50.7
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 5.5e-25 118.2 153 52.3
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 7.2e-25 117.9 156 47.4
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 6.1e-24 114.8 141 49.6
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 6.1e-24 114.8 141 49.6
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 2.3e-23 112.8 167 47.3
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 3.9e-23 112.1 167 47.3
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 5.1e-23 111.7 145 49.7
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 8.8e-23 110.9 145 55.9
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 1.1e-22 110.5 148 48.6
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 2.0e-22 109.8 149 46.3
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 2.6e-22 109.4 150 49.3
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 3.3e-22 109.0 160 47.5
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 3.3e-22 109.0 153 49.0
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 4.4e-22 108.6 149 47.0
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 5.7e-22 108.2 145 53.8
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 9.7e-22 107.5 159 45.9
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 9.7e-22 107.5 157 45.9
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.3e-21 107.1 145 48.3
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.3e-21 107.1 145 48.3
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 1.7e-21 106.7 159 47.2
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 2.8e-21 105.9 145 55.9
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 3.7e-21 105.5 145 55.9
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 6.3e-21 104.8 157 45.2
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 8.2e-21 104.4 157 47.1
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 8.2e-21 104.4 150 45.3
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 1.1e-20 104.0 158 46.2
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 1.1e-20 104.0 156 49.4
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 1.4e-20 103.6 161 42.2
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 1.8e-20 103.2 158 45.6
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 3.1e-20 102.4 160 45.6
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 3.1e-20 102.4 160 45.6
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 3.1e-20 102.4 149 45.6
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 4.1e-20 102.1 149 54.4
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 4.1e-20 102.1 147 46.9
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 5.3e-20 101.7 157 45.9
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 5.3e-20 101.7 148 47.3
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 5.3e-20 101.7 148 47.3
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 5.3e-20 101.7 148 47.3
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 5.3e-20 101.7 150 46.0
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 9.1e-20 100.9 146 47.9
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 1.2e-19 100.5 157 44.6
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 2.0e-19 99.8 155 52.3
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 2.0e-19 99.8 149 44.3
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 2.0e-19 99.8 147 44.9
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 2.0e-19 99.8 141 43.3
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 2.6e-19 99.4 148 46.6
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 5.9e-19 98.2 147 49.0
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 7.7e-19 97.8 145 43.4
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 1.3e-18 97.1 144 45.1
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.9e-18 95.9 142 41.5
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 3.8e-18 95.5 143 42.7
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 1.1e-17 94.0 145 44.8
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 1.1e-17 94.0 148 43.2
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 1.4e-17 93.6 145 43.4
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 2.5e-17 92.8 155 43.2
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 5.5e-17 91.7 142 45.1
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 4.7e-16 88.6 142 46.5
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 6.1e-16 88.2 138 53.6
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 8.0e-16 87.8 162 38.9
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 1.0e-15 87.4 146 43.2
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 1.0e-15 87.4 140 40.7
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 3.9e-15 85.5 140 40.0
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 3.9e-15 85.5 140 40.0
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 5.2e-15 85.1 163 41.7
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 8.8e-15 84.3 142 41.5
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 2.0e-14 83.2 135 43.0
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 2.6e-14 82.8 153 37.9
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 2.8e-13 79.3 95 50.5
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 4.8e-13 78.6 143 47.6
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 6.3e-13 78.2 156 39.7
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 1.4e-12 77.0 150 40.0
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 7.0e-12 74.7 151 37.1
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 5.9e-11 71.6 168 35.1
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 9.4e-09 64.3 166 38.6
Ca_08521_v3 Cicer arietinum L. HOM05D007306 ORTHO05D009112 9.4e-09 64.3 131 45.8
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 9.4e-09 64.3 87 43.7
CSS0009036 Camellia sinensis var. sinensis HOM05D007306 ORTHO05D009112 1.2e-08 63.9 93 39.8
CDE02G0820 Ceratophyllum demersum HOM05D007306 ORTHO05D009112 2.7e-08 62.8 141 34.8
unitig_22.g6026 Utricularia gibba HOM05D007306 ORTHO05D009112 1.5e-06 57.0 138 33.3
Haze_19991 Corylus avellana HOM05D000267 ORTHO05D000298 9.7e-06 54.3 57 47.4


User provided reference genes

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