Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 4.2e-187 657.9 337 100.0
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.2e-78 296.2 345 53.9
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.3e-76 290.0 341 54.5
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 4.0e-73 279.3 341 54.5
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 1.2e-72 277.7 346 52.6
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 3.4e-72 276.2 338 51.5
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.3e-71 274.2 344 52.3
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.4e-71 271.9 352 50.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.7e-69 266.5 354 49.4
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 6.0e-69 265.4 347 50.7
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 8.7e-68 261.5 352 50.0
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.5e-67 260.0 365 47.9
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 8.1e-66 255.0 366 49.2
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.3e-63 247.7 370 47.6
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.4e-62 244.2 387 44.4
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.5e-62 242.3 344 47.1
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 6.9e-57 225.3 380 46.3
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 8.4e-55 218.4 329 46.5
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 3.0e-52 209.9 368 44.6
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.8e-50 203.4 365 43.8
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 4.8e-50 202.6 388 40.5
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 8.2e-50 201.8 397 40.6
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.4e-49 201.1 369 42.3
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.0e-49 198.4 369 42.5
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.0e-49 198.4 369 42.5
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 1.5e-48 197.6 374 44.1
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 4.5e-48 196.1 366 43.7
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 7.6e-48 195.3 350 42.6
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.7e-47 194.1 369 41.7
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.9e-47 193.4 381 41.2
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 2.9e-47 193.4 370 42.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.9e-46 190.7 372 42.7
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.9e-46 190.7 278 46.0
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 2.1e-45 187.2 370 39.5
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.5e-45 186.4 360 41.4
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 1.3e-44 184.5 388 40.2
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 3.9e-44 183.0 353 43.1
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 8.7e-44 181.8 391 39.6
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.9e-43 180.6 369 41.2
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 5.7e-43 179.1 349 42.4
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 5.7e-43 179.1 361 41.3
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 1.6e-42 177.6 371 38.8
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.3e-42 175.6 369 40.7
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 8.2e-42 175.3 339 42.2
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.4e-41 174.5 368 40.2
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.2e-40 171.4 369 42.8
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.5e-40 171.0 345 39.4
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 5.9e-40 169.1 384 39.3
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 1.0e-39 168.3 270 42.6
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 3.8e-39 166.4 355 40.6
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 1.1e-38 164.9 348 40.8
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 3.2e-38 163.3 333 39.6
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 5.5e-38 162.5 279 43.0
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 9.4e-38 161.8 328 39.3
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.7e-37 160.2 333 39.0
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 4.6e-37 159.5 247 45.3
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.5e-35 154.5 360 37.8
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.5e-35 154.5 368 38.6
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.0e-35 154.1 347 38.0
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.0e-35 154.1 365 37.0
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 4.3e-35 152.9 348 39.7
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.3e-34 151.4 388 36.1
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 2.8e-34 150.2 258 42.2
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.3e-34 149.1 223 47.5
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.4e-33 147.9 389 37.8
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.8e-33 147.5 405 33.1
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 1.8e-33 147.5 280 42.9
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.1e-33 146.4 223 45.3
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 4.1e-33 146.4 362 39.2
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 5.3e-33 146.0 353 36.8
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.5e-32 144.4 349 35.8
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.5e-32 144.4 284 40.1
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 3.4e-32 143.3 352 38.4
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 5.9e-32 142.5 219 44.7
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 7.7e-32 142.1 395 36.5
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 7.7e-32 142.1 343 36.2
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.3e-31 141.4 398 35.9
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 2.2e-31 140.6 229 42.8
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.9e-31 140.2 256 40.2
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 8.5e-31 138.7 444 32.7
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 8.5e-31 138.7 256 43.0
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.4e-30 137.9 370 34.1
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 4.2e-30 136.3 346 34.7
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.6e-29 134.4 269 41.3
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.6e-29 133.3 255 39.2
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 6.7e-28 129.0 362 36.2
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 8.8e-28 128.6 172 48.8
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 3.3e-27 126.7 331 34.1
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 5.7e-27 125.9 227 39.6
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 8.2e-26 122.1 325 35.1
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.8e-25 120.9 367 33.5
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 3.1e-25 120.2 129 54.3
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.1e-25 120.2 332 34.9
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 5.3e-25 119.4 344 32.6
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 7.0e-25 119.0 351 33.0
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 9.1e-25 118.6 350 33.1
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 9.1e-25 118.6 326 37.4
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.2e-24 118.2 297 35.4
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 2.0e-24 117.5 342 35.4
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 4.5e-24 116.3 324 33.3
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.7e-23 114.4 331 33.5
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.2e-23 114.0 374 29.4
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 6.5e-23 112.5 269 36.8
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 7.2e-22 109.0 242 38.4
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 2.1e-21 107.5 259 34.0
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.1e-21 107.5 143 47.6
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 2.7e-21 107.1 332 34.0
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 4.7e-21 106.3 330 31.8
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 6.1e-21 105.9 264 34.5
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 6.1e-21 105.9 261 34.5
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.8e-20 104.4 128 48.4
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 2.3e-20 104.0 330 31.5
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 2.3e-20 104.0 331 31.4
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 5.2e-20 102.8 328 31.4
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 6.7e-20 102.4 330 33.0
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.1e-19 101.7 266 34.2
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.6e-19 100.5 343 32.9
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.6e-19 100.5 130 46.9
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.3e-19 100.1 169 39.6
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.3e-19 100.1 81 64.2
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 4.4e-19 99.8 328 31.7
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 7.5e-19 99.0 349 31.5
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.3e-18 98.2 165 40.0
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 1.7e-18 97.8 329 31.6
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 2.2e-18 97.4 134 44.8
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 2.8e-18 97.1 169 39.6
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 4.8e-18 96.3 123 47.2
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 6.3e-18 95.9 337 30.9
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 8.2e-18 95.5 127 47.2
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.1e-17 95.1 244 33.6
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.8e-17 94.4 199 40.2
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-16 90.9 333 30.0
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 3.5e-16 90.1 355 30.1
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 5.9e-16 89.4 333 30.3
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.9e-16 89.4 205 36.1
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 7.7e-16 89.0 332 31.3
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 7.7e-16 89.0 332 29.2
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-15 87.8 335 30.1
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.2e-15 87.4 332 31.0
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 3.8e-15 86.7 117 46.2
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.0e-15 86.3 80 56.2
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 6.5e-15 85.9 325 29.2
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.5e-15 85.5 207 35.7
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.1e-14 85.1 338 29.9
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 1.9e-14 84.3 338 30.8
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 1.9e-14 84.3 338 30.8
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 1.9e-14 84.3 338 30.8
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 3.2e-14 83.6 39 92.3
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.2e-14 83.6 99 51.5
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 4.2e-14 83.2 41 87.8
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 9.4e-14 82.0 75 61.3
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.6e-13 81.3 341 29.6
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.6e-13 81.3 67 64.2
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.6e-13 81.3 145 40.7
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 2.1e-13 80.9 129 41.9
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 8.0e-13 79.0 333 27.6
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 8.0e-13 79.0 250 31.6
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 8.0e-13 79.0 75 52.0
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.1e-09 66.6 68 50.0
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 7.0e-09 65.9 100 45.0
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.5e-08 63.5 37 70.3
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 5.9e-08 62.8 134 34.3
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.7e-07 61.2 120 35.0
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.2e-07 60.8 291 28.5
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 6.5e-07 59.3 149 32.9
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 1.5e-06 58.2 134 32.8
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.5e-06 57.4 59 42.4
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.5e-06 56.2 164 28.7
Gohir.D01G179100 Gossypium hirsutum HOM05D014635 ORTHO05D014310 9.5e-06 55.5 162 27.8
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 9.5e-06 55.5 149 31.5
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 9.5e-06 55.5 162 32.1
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 9.5e-06 55.5 228 28.5


User provided reference genes

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