Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.5e-71 272.7 135 100.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.5e-58 228.8 134 82.8
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.6e-57 224.9 130 82.3
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 6.2e-57 224.2 135 80.7
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.4e-56 223.0 129 82.9
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.4e-56 223.0 135 79.3
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.8e-56 222.6 129 82.9
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 3.1e-56 221.9 135 79.3
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.2e-55 219.9 135 78.5
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.0e-55 219.2 129 82.2
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.0e-55 219.2 129 81.4
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.0e-55 219.2 129 82.2
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 4.4e-55 218.0 133 77.4
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 5.8e-55 217.6 135 80.0
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.8e-55 217.6 129 79.8
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 5.8e-55 217.6 130 78.5
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.7e-54 216.1 123 84.6
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.9e-54 214.5 126 82.5
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 4.9e-54 214.5 125 83.2
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 6.4e-54 214.2 126 82.5
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 8.3e-54 213.8 135 73.3
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.4e-53 213.0 133 76.7
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.4e-53 213.0 126 82.5
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.9e-53 212.6 131 77.9
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.4e-53 212.2 135 78.5
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.4e-53 212.2 126 81.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.1e-53 211.5 126 81.7
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.1e-53 211.5 134 75.4
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 5.4e-53 211.1 133 76.7
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 5.4e-53 211.1 128 77.3
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 5.4e-53 211.1 126 79.4
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 9.2e-53 210.3 134 74.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.6e-52 209.5 130 75.4
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.6e-52 209.5 130 76.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.6e-52 209.5 127 76.4
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.0e-52 209.1 133 75.9
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 2.7e-52 208.8 135 74.1
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 4.6e-52 208.0 134 73.1
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 6.0e-52 207.6 134 74.6
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.3e-51 206.5 120 80.8
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.3e-51 206.5 131 73.3
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.9e-51 204.9 130 73.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.9e-51 204.9 133 72.9
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 5.0e-51 204.5 135 74.1
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 5.0e-51 204.5 126 77.0
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 6.6e-51 204.1 129 75.2
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 8.6e-51 203.8 128 75.8
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.1e-50 203.4 126 78.6
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.1e-50 203.4 127 74.8
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.5e-50 203.0 130 75.4
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.5e-50 203.0 127 75.6
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.9e-50 202.6 126 77.0
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 9.5e-50 200.3 130 73.8
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.2e-49 199.9 123 76.4
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.6e-49 199.5 126 76.2
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.1e-49 199.1 148 66.9
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.6e-49 198.4 127 73.2
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 4.7e-49 198.0 129 74.4
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 4.7e-49 198.0 119 76.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.2e-49 197.6 126 77.0
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 8.1e-49 197.2 132 73.5
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.1e-49 197.2 119 81.5
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.1e-49 197.2 128 74.2
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.1e-48 196.8 126 77.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.8e-48 196.1 128 72.7
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.3e-48 195.7 122 76.2
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 2.3e-48 195.7 127 70.1
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 4.0e-48 194.9 122 77.9
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 5.2e-48 194.5 123 74.8
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.8e-48 194.1 126 75.4
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.8e-48 194.1 126 73.0
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 8.9e-48 193.7 127 70.9
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.0e-47 192.6 124 73.4
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 3.4e-47 191.8 127 70.1
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 5.8e-47 191.0 130 71.5
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 5.8e-47 191.0 121 71.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 9.8e-47 190.3 128 71.1
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 9.8e-47 190.3 124 70.2
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 9.8e-47 190.3 127 69.3
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.3e-46 189.9 130 70.8
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.3e-46 189.9 124 70.2
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.2e-46 189.1 124 71.0
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 6.4e-46 187.6 123 70.7
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 6.4e-46 187.6 127 68.5
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.4e-45 186.4 125 69.6
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.4e-45 186.4 119 74.8
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.4e-45 186.4 124 70.2
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.4e-45 186.4 120 71.7
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.9e-45 186.0 120 74.2
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.2e-45 185.3 127 69.3
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 5.4e-45 184.5 115 77.4
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 5.4e-45 184.5 126 67.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 9.2e-45 183.7 132 64.4
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.2e-44 183.3 127 66.1
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.2e-44 183.3 127 68.5
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 2.1e-44 182.6 126 71.4
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.7e-44 182.2 120 73.3
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 7.8e-44 180.6 132 62.9
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.0e-43 180.3 122 71.3
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.3e-43 179.9 119 67.2
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.7e-43 179.5 127 66.9
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 6.6e-43 177.6 117 74.4
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 6.6e-43 177.6 120 65.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 6.6e-43 177.6 127 63.8
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 6.6e-43 177.6 120 69.2
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.5e-42 175.6 133 61.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 9.5e-42 173.7 119 66.4
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.6e-41 172.9 133 66.2
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.6e-41 172.9 130 63.1
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 2.8e-41 172.2 124 64.5
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.6e-41 171.8 125 63.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.1e-40 170.2 115 73.0
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.8e-40 169.5 106 77.4
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.3e-40 169.1 123 64.2
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 2.3e-40 169.1 129 65.1
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 4.0e-40 168.3 128 67.2
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 8.9e-40 167.2 122 63.9
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.2e-39 166.8 125 61.6
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-39 166.4 105 77.1
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.6e-39 165.6 112 67.0
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 5.8e-39 164.5 119 63.0
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.7e-38 162.9 107 73.8
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-37 159.8 121 61.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.4e-37 159.8 121 61.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.4e-37 159.8 121 61.2
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.2e-37 158.7 134 56.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 7.1e-37 157.5 126 59.5
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 9.2e-37 157.1 131 58.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-36 156.8 128 60.9
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.2e-36 156.8 123 59.3
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.6e-36 156.4 127 59.8
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.7e-36 155.6 120 61.7
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 3.5e-36 155.2 128 57.0
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.6e-36 154.8 131 59.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 4.6e-36 154.8 121 60.3
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 4.6e-36 154.8 121 57.9
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 6.0e-36 154.5 124 58.1
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 6.0e-36 154.5 118 61.0
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 7.8e-36 154.1 121 57.0
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 7.8e-36 154.1 121 57.0
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.0e-35 153.7 119 63.0
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.3e-35 153.3 121 61.2
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.7e-35 152.9 128 56.2
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.9e-35 151.8 120 60.0
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 6.6e-35 151.0 128 57.0
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.5e-34 149.8 127 56.7
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.5e-34 149.8 116 59.5
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.5e-34 149.8 119 58.8
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.9e-34 149.4 122 59.8
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.9e-34 149.4 123 56.9
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.9e-34 149.4 123 56.9
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.5e-34 149.1 125 58.4
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.3e-34 147.5 107 69.2
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.2e-33 146.7 119 60.5
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.1e-29 133.7 135 55.6
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.4e-29 132.5 122 50.8
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 9.3e-29 130.6 119 50.4
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.5e-26 123.2 103 59.2
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.1e-25 117.5 66 78.8
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.2e-20 103.6 63 81.0
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.7e-19 97.8 82 65.9
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.7e-19 97.8 59 81.4
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.7e-19 97.8 59 81.4
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.7e-19 97.8 62 71.0
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.5e-18 95.9 54 77.8
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 7.4e-18 94.4 61 77.0
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 9.6e-18 94.0 65 73.8
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.6e-17 93.2 62 74.2
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-15 86.3 53 75.5
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.5e-15 85.1 64 67.2
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.8e-15 84.7 68 51.5
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.9e-14 82.4 112 36.6
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.9e-14 82.4 118 39.0
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 4.2e-13 78.6 51 78.4
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 5.1e-11 71.6 59 59.3
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 9.6e-10 67.4 67 52.2
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.4e-08 62.8 63 47.6
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 2.9e-06 55.8 37 73.0


User provided reference genes

Program Settings