Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 6.1e-208 727.2 368 100.0
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 9.6e-137 490.7 371 67.9
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.7e-133 479.9 380 66.3
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.7e-133 479.9 380 66.3
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 2.9e-117 426.0 363 60.1
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.2e-116 422.2 369 58.5
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 5.5e-116 421.8 362 59.9
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.6e-115 420.2 373 59.2
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.5e-113 413.7 362 59.7
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 2.5e-113 412.9 361 59.3
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 9.7e-113 411.0 367 58.9
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.7e-112 410.2 363 58.7
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.2e-112 409.8 370 58.6
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.7e-112 409.1 374 57.2
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.8e-111 406.8 363 58.4
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.8e-111 406.8 373 57.6
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.3e-109 400.6 366 57.9
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.5e-108 396.4 362 56.9
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 7.2e-108 394.8 379 54.6
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 2.1e-107 393.3 373 55.8
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.7e-107 392.9 362 56.6
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 4.7e-107 392.1 370 55.7
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.4e-106 390.6 359 58.5
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 5.1e-106 388.7 370 55.7
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.6e-105 386.3 375 56.3
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.3e-105 386.0 364 55.8
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.3e-105 386.0 364 55.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.3e-104 384.0 338 55.9
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.7e-104 383.6 377 57.6
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.3e-104 381.7 387 53.2
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 8.2e-104 381.3 375 54.9
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.1e-103 379.0 362 55.8
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 5.3e-103 378.6 373 54.2
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 5.0e-101 372.1 371 55.0
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.1e-100 370.9 368 54.6
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.6e-99 367.1 372 54.8
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 2.1e-99 366.7 366 53.3
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 5.7e-97 358.6 366 52.7
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.2e-96 356.7 298 60.7
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.2e-96 356.7 379 53.3
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.8e-96 356.3 375 51.7
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.8e-96 356.3 375 51.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.1e-95 354.4 363 51.8
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 3.1e-95 352.8 368 51.6
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 3.1e-95 352.8 368 51.4
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.5e-94 349.4 408 50.0
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.5e-94 349.4 408 50.0
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.7e-94 348.2 367 51.0
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.7e-93 347.1 366 50.8
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.2e-93 346.7 409 49.9
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 8.5e-93 344.7 367 51.2
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.2e-92 342.8 277 58.8
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 9.4e-92 341.3 361 49.9
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.2e-91 340.9 363 50.4
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 6.1e-91 338.6 360 49.7
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 8.0e-91 338.2 361 50.7
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 1.0e-90 337.8 367 52.3
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.8e-90 337.0 362 48.6
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 3.0e-90 336.3 361 49.9
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 3.0e-90 336.3 379 50.1
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.2e-89 334.3 370 49.2
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.2e-89 334.3 362 47.5
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 2.0e-89 333.6 366 51.6
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 2.6e-89 333.2 368 48.9
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 2.6e-89 333.2 362 48.1
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 4.4e-89 332.4 368 48.6
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 5.7e-89 332.0 362 50.3
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.7e-89 331.3 277 58.1
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 9.7e-89 331.3 375 48.8
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 9.7e-89 331.3 368 48.9
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 2.2e-88 330.1 362 48.1
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 2.8e-88 329.7 363 51.2
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.7e-88 329.3 360 48.6
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 8.2e-88 328.2 360 48.9
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.1e-87 327.8 364 49.2
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.1e-87 327.8 363 49.9
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.8e-87 327.0 360 48.3
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 4.1e-87 325.9 371 49.1
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.1e-87 325.9 378 47.4
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 9.1e-87 324.7 364 48.4
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.0e-86 323.6 279 55.2
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.7e-86 323.2 367 46.9
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 5.9e-86 322.0 362 50.6
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.9e-86 322.0 375 49.6
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 7.7e-86 321.6 364 50.0
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.3e-85 320.9 362 49.7
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 2.9e-85 319.7 366 46.7
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 2.9e-85 319.7 363 48.8
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 6.5e-85 318.5 288 56.6
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 8.5e-85 318.2 337 52.8
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.1e-84 317.8 368 48.6
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.5e-84 317.4 364 48.9
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.5e-84 317.4 326 52.1
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.5e-84 317.4 362 48.9
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.9e-84 317.0 291 53.3
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 2.5e-84 316.6 358 48.6
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.2e-84 316.2 363 48.5
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 3.2e-84 316.2 361 48.2
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 3.2e-84 316.2 267 56.9
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 5.5e-84 315.5 363 48.8
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.2e-83 314.3 369 48.0
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.6e-83 313.9 364 45.9
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.1e-83 313.5 373 46.6
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.1e-83 313.5 381 46.5
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.1e-83 312.0 364 47.8
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.8e-82 310.5 365 48.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 4.0e-82 309.3 382 48.7
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 4.0e-82 309.3 369 47.4
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.5e-81 307.4 367 48.8
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 2.0e-81 307.0 361 47.1
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.4e-81 306.2 275 56.4
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.4e-81 305.8 273 52.7
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 5.7e-81 305.4 271 53.9
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.2e-80 303.5 363 48.2
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 8.3e-80 301.6 309 50.5
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 2.4e-79 300.1 293 52.6
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 5.9e-78 295.4 361 46.3
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 7.7e-78 295.0 264 55.3
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.3e-77 294.3 295 52.9
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.9e-77 293.1 362 47.2
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 9.5e-76 288.1 323 49.5
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.2e-75 287.7 271 54.2
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.0e-74 282.7 335 46.9
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 1.5e-73 280.8 360 45.8
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.0e-73 280.4 373 44.2
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.7e-72 277.3 323 47.4
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.6e-70 270.8 286 49.0
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.6e-69 265.4 373 41.3
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 6.6e-69 265.4 319 48.0
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.3e-68 261.9 362 44.5
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 4.0e-66 256.1 253 52.2
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 9.8e-65 251.5 234 53.8
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 3.7e-64 249.6 279 47.7
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 3.7e-64 249.6 279 47.7
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 8.3e-64 248.4 235 54.5
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 2.4e-63 246.9 279 47.3
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 4.6e-62 242.7 293 45.7
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 7.8e-62 241.9 260 51.5
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.3e-61 240.4 323 45.5
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 6.2e-59 232.3 266 47.0
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 8.9e-58 228.4 312 37.5
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.9e-56 223.4 216 52.8
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.9e-55 220.7 359 38.4
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.0e-53 214.9 301 42.2
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 3.9e-53 213.0 263 45.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.2e-49 201.4 253 45.1
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-49 200.7 319 39.8
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.3e-45 187.2 330 36.4
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.1e-44 184.9 182 53.3
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.2e-43 181.4 329 37.1
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 5.4e-39 166.0 209 44.5
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 2.1e-38 164.1 450 27.6
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 7.8e-38 162.2 253 38.7
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 4.3e-36 156.4 117 61.5
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 2.8e-35 153.7 165 50.9
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 6.9e-34 149.1 180 44.4
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 4.2e-31 139.8 217 41.0
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 9.3e-31 138.7 210 42.9
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 3.9e-29 133.3 285 31.6
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 7.3e-28 129.0 160 43.1
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.4e-26 124.0 158 50.6
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 2.0e-25 120.9 214 40.7
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 6.4e-24 115.9 156 42.9
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 1.9e-23 114.4 151 48.3
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.8e-21 107.8 112 49.1
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.9e-20 104.4 290 29.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.6e-20 102.8 101 54.5
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.8e-19 100.5 98 52.0
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 4.8e-19 99.8 98 50.0
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.2e-17 95.1 85 48.2
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 2.9e-16 90.5 78 52.6
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 4.9e-16 89.7 86 52.3
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 8.4e-16 89.0 105 39.0
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 4.2e-15 86.7 131 34.4
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 8.7e-13 79.0 110 37.3
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 5.8e-09 66.2 43 65.1
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 5.8e-09 66.2 114 36.0
Gohir.D03G068466 Gossypium hirsutum HOM05D021254 ORTHO05D036334 1.6e-06 58.2 60 51.7
Gorai.003G053800 Gossypium raimondii HOM05D021254 ORTHO05D036334 1.6e-06 58.2 60 51.7
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.6e-06 58.2 55 49.1
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 6.1e-06 56.2 56 46.4
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 6.1e-06 56.2 47 57.4
Gorai.006G001100 Gossypium raimondii HOM05D021254 ORTHO05D036334 7.9e-06 55.8 60 50.0


User provided reference genes

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