Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 4.7e-35 150.6 73 100.0
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 2.2e-32 141.7 73 91.8
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.4e-31 139.0 73 89.0
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 9.1e-31 136.3 71 88.7
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 2.7e-30 134.8 73 83.6
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.7e-30 134.8 73 86.3
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.7e-30 134.8 73 86.3
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.7e-30 133.3 73 84.9
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.0e-29 132.9 71 87.3
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-29 132.5 70 88.6
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-29 132.5 74 85.1
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-29 132.5 70 88.6
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.3e-29 132.5 74 85.1
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.3e-29 132.5 70 88.6
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 2.2e-29 131.7 74 85.1
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.9e-29 131.3 74 83.8
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.9e-29 131.3 73 83.6
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 6.5e-29 130.2 74 83.8
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 6.5e-29 130.2 74 83.8
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.5e-28 128.3 73 82.2
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 3.2e-28 127.9 73 80.8
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 4.2e-28 127.5 73 82.2
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 82.2
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 82.2
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 80.8
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 80.8
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.6e-27 125.6 73 82.2
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 84.3
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 84.3
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 84.3
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 80.8
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 80.8
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 3.6e-27 124.4 73 78.1
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 3.6e-27 124.4 70 82.9
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.6e-27 124.4 70 82.9
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 3.6e-27 124.4 73 79.5
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 3.6e-27 124.4 73 80.8
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.7e-27 124.0 73 80.8
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 4.7e-27 124.0 73 80.8
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.7e-27 124.0 73 79.5
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 4.7e-27 124.0 74 78.4
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 6.1e-27 123.6 67 85.1
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 6.1e-27 123.6 73 82.2
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 6.1e-27 123.6 71 83.1
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 6.1e-27 123.6 71 83.1
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.0e-27 123.2 68 85.3
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 8.0e-27 123.2 74 78.4
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 1.4e-26 122.5 73 79.5
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 71 78.9
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 78.1
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 78.1
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 78.1
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 78.1
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 78.1
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 78.1
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 2.3e-26 121.7 71 80.3
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 81.1
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-26 121.3 70 80.0
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 4.0e-26 120.9 71 80.3
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 4.0e-26 120.9 73 76.7
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 5.2e-26 120.6 71 80.3
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 5.2e-26 120.6 71 80.3
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 5.2e-26 120.6 73 79.5
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.2e-26 120.6 73 76.7
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 6.8e-26 120.2 71 77.5
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 8.8e-26 119.8 73 75.3
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.8e-26 119.8 76 77.6
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 8.8e-26 119.8 71 78.9
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.5e-25 119.0 73 78.1
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.0e-25 118.6 71 80.3
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.0e-25 118.6 71 76.1
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 2.6e-25 118.2 65 83.1
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 4.4e-25 117.5 74 77.0
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 4.4e-25 117.5 65 83.1
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 4.4e-25 117.5 67 82.1
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 4.4e-25 117.5 73 76.7
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 5.7e-25 117.1 73 78.1
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 7.5e-25 116.7 74 77.0
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 7.5e-25 116.7 66 78.8
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 7.5e-25 116.7 74 77.0
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 7.5e-25 116.7 75 74.7
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 7.5e-25 116.7 74 78.4
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 9.8e-25 116.3 68 77.9
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.3e-24 115.9 71 76.1
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.3e-24 115.9 65 81.5
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.7e-24 115.5 74 74.3
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.7e-24 115.5 74 74.3
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.7e-24 115.5 82 69.5
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 2.2e-24 115.2 73 74.0
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 2.2e-24 115.2 68 77.9
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 78.9
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.8e-24 114.8 67 77.6
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.8e-24 114.8 73 71.2
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 3.7e-24 114.4 95 62.1
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 6.3e-24 113.6 97 62.9
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 6.3e-24 113.6 73 74.0
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 8.3e-24 113.2 71 76.1
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 8.3e-24 113.2 73 74.0
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 8.3e-24 113.2 68 77.9
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.1e-23 112.8 71 76.1
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.1e-23 112.8 71 76.1
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-23 112.5 71 76.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.8e-23 112.1 56 89.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.4e-23 111.7 90 64.4
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.4e-23 111.7 73 72.6
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 2.4e-23 111.7 73 75.3
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.1e-23 111.3 71 74.6
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 4.1e-23 110.9 73 74.0
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 4.1e-23 110.9 73 74.0
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 5.4e-23 110.5 61 80.3
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 9.1e-23 109.8 71 76.1
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 2.0e-22 108.6 63 77.8
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 3.5e-22 107.8 65 78.5
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 3.5e-22 107.8 100 58.0
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.9e-22 107.1 83 67.5
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 7.7e-22 106.7 66 75.8
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.0e-21 106.3 66 75.8
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.0e-21 106.3 66 74.2
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.0e-21 106.3 101 54.5
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.3e-21 105.9 66 75.8
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.3e-21 105.9 66 75.8
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.3e-21 105.9 66 75.8
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.3e-21 105.9 66 75.8
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.3e-21 105.9 61 77.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.3e-21 105.9 66 75.8
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 1.7e-21 105.5 66 74.2
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.7e-21 105.5 73 71.2
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.7e-21 105.5 56 85.7
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.7e-21 105.5 63 76.2
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 2.9e-21 104.8 73 68.5
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 5.0e-21 104.0 74 70.3
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.1e-20 102.8 56 83.9
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-20 102.4 62 77.4
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-20 102.4 62 77.4
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.5e-20 102.4 62 77.4
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.5e-20 102.4 62 77.4
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.5e-20 102.4 62 77.4
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.5e-20 102.4 62 77.4
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.3e-20 101.3 64 73.4
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 3.3e-20 101.3 64 73.4
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.2e-19 99.4 58 74.1
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.6e-19 99.0 57 80.7
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.3e-18 95.1 57 75.4
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.3e-18 95.1 124 44.4
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 3.0e-18 94.7 56 75.0
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 4.0e-18 94.4 62 66.1
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 5.2e-18 94.0 56 75.0
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 6.8e-18 93.6 89 53.9
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 6.8e-18 93.6 56 73.2
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 8.9e-18 93.2 65 66.2
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 8.9e-18 93.2 56 76.8
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 8.9e-18 93.2 65 67.7
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.2e-17 92.8 56 78.6
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.0e-17 92.0 56 78.6
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 2.0e-17 92.0 56 73.2
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 5.7e-17 90.5 56 73.2
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 9.8e-17 89.7 53 79.2
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-16 89.4 75 62.7
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 6.3e-16 87.0 56 75.0
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.1e-15 86.3 62 56.5
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 3.2e-15 84.7 67 52.2
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 5.4e-15 84.0 56 66.1
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 2.7e-14 81.6 52 69.2
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 3.5e-14 81.3 65 58.5
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.8e-14 80.1 51 68.6
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 7.8e-14 80.1 56 66.1
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.0e-13 79.7 56 62.5
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.9e-13 78.2 63 60.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.5e-12 75.9 40 80.0
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.9e-12 75.5 56 64.3
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-11 72.8 52 69.2
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.0e-10 69.7 38 78.9
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 1.4e-10 69.3 41 78.0
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.8e-10 68.9 51 62.7
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.8e-10 68.9 51 62.7
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 8.9e-10 66.6 40 77.5
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.0e-09 65.5 40 72.5
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 3.4e-09 64.7 34 85.3
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 9.2e-07 56.6 51 51.0
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 6.0e-06 53.9 52 48.1


User provided reference genes

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