Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 4.6e-77 291.2 150 100.0
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 2.6e-56 222.2 153 74.5
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 3.4e-56 221.9 152 78.3
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 7.6e-56 220.7 152 77.6
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 6.4e-55 217.6 154 72.7
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 9.2e-54 213.8 149 73.2
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 4.6e-53 211.5 151 67.5
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 4.6e-53 211.5 151 74.2
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 7.8e-53 210.7 151 66.9
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 7.8e-53 210.7 151 66.9
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 2.3e-52 209.1 152 70.4
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 2.3e-52 209.1 151 74.2
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 5.1e-52 208.0 147 75.5
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 6.6e-52 207.6 149 71.1
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 8.6e-52 207.2 151 65.6
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 3.3e-51 205.3 149 73.2
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 3.3e-51 205.3 154 70.1
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 8.1e-50 200.7 149 69.8
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 8.1e-50 200.7 152 71.7
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 1.1e-49 200.3 149 70.5
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 1.1e-49 200.3 152 71.7
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 3.1e-49 198.7 152 71.1
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 3.1e-49 198.7 156 68.6
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 5.2e-49 198.0 147 72.1
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 6.9e-49 197.6 151 70.2
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 1.2e-48 196.8 157 67.5
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 1.2e-48 196.8 151 70.2
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.0e-48 196.1 150 69.3
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 2.0e-48 196.1 148 70.9
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 4.4e-48 194.9 153 68.6
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 7.6e-48 194.1 153 68.0
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 9.9e-48 193.7 147 69.4
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 9.9e-48 193.7 150 68.7
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 1.7e-47 193.0 149 69.1
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.4e-46 189.1 147 68.0
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.4e-46 189.1 147 68.0
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 7.1e-46 187.6 157 66.9
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 9.3e-46 187.2 149 67.1
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 1.3e-44 183.3 151 66.2
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 3.9e-44 181.8 150 64.7
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 6.6e-44 181.0 160 61.9
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 8.7e-44 180.6 151 64.9
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 8.7e-44 180.6 145 64.8
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 8.7e-44 180.6 108 81.5
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.9e-43 179.5 151 64.2
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 1.9e-43 179.5 149 64.4
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 2.5e-43 179.1 146 64.4
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 5.6e-43 177.9 144 66.7
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 9.6e-43 177.2 146 61.6
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 1.3e-42 176.8 111 79.3
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.8e-42 175.6 118 72.0
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 6.9e-41 171.0 149 62.4
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 2.6e-40 169.1 152 63.2
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 2.6e-40 169.1 149 60.4
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 4.5e-40 168.3 153 60.1
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 7.6e-40 167.5 146 61.0
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 9.9e-40 167.2 149 59.7
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 1.7e-39 166.4 145 58.6
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 2.2e-39 166.0 152 59.9
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 2.2e-39 166.0 132 62.9
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 4.9e-39 164.9 139 67.6
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 6.4e-39 164.5 145 62.8
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 1.4e-38 163.3 152 59.2
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.2e-38 162.2 122 66.4
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 4.2e-38 161.8 148 61.5
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 3.5e-37 158.7 145 57.9
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 4.6e-37 158.3 146 59.6
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.6e-37 158.3 145 62.8
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 6.0e-37 157.9 148 61.5
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 6.0e-37 157.9 146 58.2
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 7.9e-37 157.5 146 59.6
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 7.9e-37 157.5 146 59.6
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 1.0e-36 157.1 145 60.7
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.0e-36 157.1 149 58.4
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 1.0e-36 157.1 145 59.3
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.3e-36 156.8 142 60.6
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 3.0e-36 155.6 145 57.2
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 3.9e-36 155.2 149 57.7
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 3.9e-36 155.2 149 58.4
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 5.1e-36 154.8 145 57.2
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 5.1e-36 154.8 146 58.9
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 6.7e-36 154.5 149 55.0
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 6.7e-36 154.5 146 58.2
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 8.7e-36 154.1 115 68.7
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.5e-35 153.3 145 59.3
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 1.9e-35 152.9 150 57.3
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 1.9e-35 152.9 159 55.3
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 4.3e-35 151.8 150 58.7
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 5.6e-35 151.4 146 57.5
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.1e-33 145.6 121 62.0
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 5.3e-33 144.8 153 59.5
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 5.3e-33 144.8 153 59.5
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 6.9e-33 144.4 152 53.3
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 1.2e-32 143.7 145 53.8
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 1.3e-31 140.2 143 58.0
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 1.3e-31 140.2 139 54.7
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 1.3e-31 140.2 149 56.4
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 1.7e-31 139.8 139 56.8
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 4.9e-31 138.3 149 53.7
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.9e-30 136.3 144 55.6
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 9.3e-30 134.0 153 53.6
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 7.9e-29 131.0 139 52.5
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 1.0e-28 130.6 147 53.1
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 5.1e-28 128.3 132 56.8
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 5.1e-28 128.3 135 51.9
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 1.1e-27 127.1 135 54.1
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 3.3e-27 125.6 140 52.9
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 5.6e-27 124.8 137 56.2
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 7.4e-27 124.4 84 76.2
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 7.4e-27 124.4 84 76.2
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 2.1e-26 122.9 84 75.0
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 1.5e-24 116.7 105 56.2
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 7.6e-24 114.4 141 49.6
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 1.0e-20 104.0 105 55.2
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 1.9e-19 99.8 138 45.7
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 1.9e-19 99.8 84 65.5
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 3.3e-19 99.0 105 54.3
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 9.7e-19 97.4 105 53.3
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 9.7e-19 97.4 105 53.3
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 4.5e-16 88.6 72 58.3
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.2e-14 82.0 64 68.8
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 2.1e-13 79.7 106 46.2
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 3.0e-12 75.9 141 36.2
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 1.7e-10 70.1 140 36.4
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 1.7e-07 60.1 106 39.6
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 6.5e-07 58.2 72 50.0


User provided reference genes

Program Settings