Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 3.6e-123 444.9 221 100.0
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 2.0e-89 332.8 234 75.2
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 3.4e-89 332.0 228 72.4
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 2.5e-87 325.9 234 72.2
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 2.1e-86 322.8 236 72.5
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 1.5e-84 316.6 190 81.6
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 1.6e-83 313.2 193 79.8
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 4.8e-83 311.6 206 75.2
Lj5g0010413 Lotus japonicus HOM05D007539 ORTHO05D009315 1.4e-82 310.1 176 81.8
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 4.1e-82 308.5 184 78.3
PGR142G1614 Punica granatum HOM05D007539 ORTHO05D009315 5.3e-82 308.1 232 69.4
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 6.9e-82 307.8 236 68.6
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 6.9e-82 307.8 227 71.4
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 1.5e-81 306.6 172 85.5
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 2.0e-81 306.2 190 77.9
VMungo0720G2140 Vigna mungo HOM05D007539 ORTHO05D009315 2.0e-81 306.2 192 77.1
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 2.6e-81 305.8 229 68.6
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 3.4e-81 305.4 227 68.3
Potri.016G096900 Populus trichocarpa HOM05D007539 ORTHO05D009315 3.4e-81 305.4 189 78.3
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 4.5e-81 305.1 232 68.1
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 4.5e-81 305.1 190 77.9
Glyma.10G063500 Glycine max HOM05D007539 ORTHO05D009315 5.9e-81 304.7 173 82.7
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 5.9e-81 304.7 172 85.5
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 1.0e-80 303.9 174 82.8
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 1.0e-80 303.9 174 82.8
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 1.3e-80 303.5 222 71.2
Phvul.007G226000 Phaseolus vulgaris HOM05D007539 ORTHO05D009315 1.4e-79 300.1 194 75.8
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 5.5e-79 298.1 172 79.7
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 9.4e-79 297.4 191 77.0
Gohir.D04G106800 Gossypium hirsutum HOM05D007539 ORTHO05D009315 1.6e-78 296.6 231 67.5
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 2.1e-78 296.2 225 68.9
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 3.6e-78 295.4 225 68.9
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 1.0e-77 293.9 175 76.6
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 2.3e-77 292.7 172 77.3
Prupe.7G122900 Prunus persica HOM05D007539 ORTHO05D009315 3.9e-77 292.0 229 66.4
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 3.9e-77 292.0 225 68.0
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 5.1e-77 291.6 175 78.3
Medtr1g062250 Medicago truncatula HOM05D007539 ORTHO05D009315 5.1e-77 291.6 213 71.4
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 5.1e-77 291.6 225 68.0
BcaB01g05802 Brassica carinata HOM05D007539 ORTHO05D009315 6.7e-77 291.2 225 66.7
Aqoxy2G01556 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 4.3e-76 288.5 169 80.5
Sed0004549 Sechium edule HOM05D007539 ORTHO05D009315 7.4e-76 287.7 225 67.1
GSVIVG01033714001 Vitis vinifera HOM05D007539 ORTHO05D009315 9.7e-76 287.3 179 74.9
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 1.7e-75 286.6 216 68.5
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 2.2e-75 286.2 184 75.0
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 2.2e-75 286.2 220 68.2
CAN.G729.5 Capsicum annuum HOM05D007539 ORTHO05D009315 2.8e-75 285.8 167 80.8
MBI11_g41953_MAGBIO Magnolia biondii HOM05D007539 ORTHO05D009315 6.3e-75 284.6 229 63.3
CARHR209760 Cardamine hirsuta HOM05D007539 ORTHO05D009315 8.2e-75 284.3 178 74.7
Ah.08g211220 Amaranthus hybridus HOM05D007539 ORTHO05D009315 1.8e-74 283.1 194 71.6
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 2.4e-74 282.7 213 66.2
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.1e-74 282.3 227 66.5
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 4.1e-74 282.0 232 66.4
Thhalv10014552m.g Eutrema salsugineum HOM05D007539 ORTHO05D009315 5.3e-74 281.6 178 75.3
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 1.2e-73 280.4 225 64.9
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 1.2e-73 280.4 220 65.9
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 3.4e-73 278.9 223 65.0
SalBow5G4705 Salvia bowleyana HOM05D007539 ORTHO05D009315 5.9e-73 278.1 170 74.1
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 7.7e-73 277.7 182 75.3
EL10Ac7g16719 Beta vulgaris HOM05D007539 ORTHO05D009315 1.7e-72 276.6 178 71.9
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 2.9e-72 275.8 223 64.1
Sabra16G0100100 Salix brachista HOM05D007539 ORTHO05D009315 6.5e-72 274.6 230 61.7
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 1.4e-71 273.5 252 57.9
HPP92_014788 Vanilla planifolia HOM05D007539 ORTHO05D009315 3.2e-71 272.3 167 74.3
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 5.5e-71 271.6 226 64.6
unitig_8.g4721 Utricularia gibba HOM05D007539 ORTHO05D009315 5.5e-71 271.6 211 63.0
A03p01240 Brassica napus HOM05D007539 ORTHO05D009315 9.4e-71 270.8 235 61.7
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 9.4e-71 270.8 223 63.2
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 1.2e-70 270.4 217 61.8
FAN05G5748 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.7e-70 269.2 227 63.9
FAN02G2576 Fragaria x ananassa HOM05D007539 ORTHO05D009315 6.1e-70 268.1 228 64.9
Os08g0560600 Oryza sativa ssp. japonica HOM05D007539 ORTHO05D009315 6.1e-70 268.1 179 69.8
AUR62042699 Chenopodium quinoa HOM05D007539 ORTHO05D009315 1.0e-69 267.3 222 61.3
Zm00001eb175880 Zea mays HOM05D007539 ORTHO05D009315 5.2e-69 265.0 171 70.2
CDE02G3922 Ceratophyllum demersum HOM05D007539 ORTHO05D009315 5.7e-68 261.5 187 68.4
ECA238G4618 Erigeron canadensis HOM05D007539 ORTHO05D009315 5.7e-68 261.5 166 74.7
Glyma.13G148000 Glycine max HOM05D007539 ORTHO05D009315 1.3e-67 260.4 142 84.5
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 3.7e-67 258.8 208 66.3
Nitab4.5_0000725g0080 Nicotiana tabacum HOM05D007539 ORTHO05D009315 8.2e-67 257.7 259 57.1
Lalb_Chr02g0155351 Lupinus albus HOM05D007539 ORTHO05D009315 1.1e-66 257.3 147 79.6
ATR0950G005 Amborella trichopoda HOM05D007539 ORTHO05D009315 3.1e-66 255.8 192 66.1
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 5.3e-66 255.0 199 67.3
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 1.3e-64 250.4 205 65.4
BolC3t12712H Brassica oleracea HOM05D007539 ORTHO05D009315 2.5e-63 246.1 298 49.0
Ah.12g063350 Amaranthus hybridus HOM05D007539 ORTHO05D009315 8.0e-62 241.1 139 78.4
vmacro07349 Vaccinium macrocarpon HOM05D007539 ORTHO05D009315 3.3e-60 235.7 142 76.1
C03p01600 Brassica napus HOM05D007539 ORTHO05D009315 7.5e-60 234.6 195 63.6
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 8.2e-59 231.1 148 73.6
BcaB01g05814 Brassica carinata HOM05D007539 ORTHO05D009315 1.4e-58 230.3 187 64.7
Lsat_1_v5_gn_2_18420 Lactuca sativa HOM05D007539 ORTHO05D009315 1.5e-52 210.3 122 78.7
Carub.0006s0239 Capsella rubella HOM05D007539 ORTHO05D009315 6.3e-51 204.9 123 76.4
AL6G13050 Arabidopsis lyrata HOM05D007539 ORTHO05D009315 1.4e-50 203.8 123 74.8
AUR62040192 Chenopodium quinoa HOM05D007539 ORTHO05D009315 1.7e-48 196.8 122 73.0
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 5.7e-44 181.8 269 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3355 Anthoceros agrestis HOM05D007539 ORTHO05D009315 3.3e-39 166.0 177 43.5
Mapoly0014s0214 Marchantia polymorpha HOM05D007539 ORTHO05D009315 3.3e-39 166.0 230 43.0
FAN09G1910 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.3e-32 143.3 77 87.0
QL07p041388 Quercus lobata HOM05D007539 ORTHO05D009315 1.5e-31 140.6 77 80.5
CBR_g37238 Chara braunii HOM05D007539 ORTHO05D009315 8.9e-21 104.8 219 29.2
CSS0032451 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 2.6e-12 76.6 101 51.5
CSS0027054 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 3.4e-12 76.3 83 60.2
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-11 73.6 119 47.9
CSS0044668 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.4e-10 70.9 84 57.1
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 1.2e-06 57.8 97 47.4
CSS0035774 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 3.6e-06 56.2 102 46.1
CSS0039126 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 3.6e-06 56.2 102 46.1


User provided reference genes

Program Settings