Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 0.0e+00 1083.9 531 100.0
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 3.0e-301 1037.7 529 96.0
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.1e-286 988.4 529 90.5
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 3.7e-283 977.6 528 88.8
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 8.3e-283 976.5 529 89.6
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 9.2e-282 973.0 529 87.9
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.6e-281 972.2 529 87.7
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.0e-280 968.0 531 88.9
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.1e-279 966.1 529 87.1
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.3e-279 964.5 531 88.5
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 7.3e-279 963.4 529 87.3
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 3.6e-278 961.1 529 88.1
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 6.2e-278 960.3 529 87.0
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 6.8e-277 956.8 529 86.6
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.2e-276 956.1 529 87.1
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 2.0e-276 955.3 529 86.4
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 5.8e-276 953.7 529 86.6
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 5.8e-276 953.7 529 87.0
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.3e-275 952.6 529 87.9
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 2.9e-275 951.4 531 84.7
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 6.4e-275 950.3 529 87.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 6.4e-275 950.3 529 86.6
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.6e-273 945.7 529 86.6
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.7e-273 944.9 529 85.6
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 3.5e-273 944.5 534 84.8
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.6e-273 944.1 529 85.4
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 6.0e-273 943.7 529 86.2
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.3e-272 941.8 529 86.0
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.3e-272 941.8 529 86.0
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 3.0e-272 941.4 529 85.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.0e-272 941.4 529 85.4
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.0e-272 941.4 529 85.4
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 3.9e-272 941.0 529 85.3
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 5.1e-272 940.6 529 85.3
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 5.1e-272 940.6 529 85.3
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-271 939.5 529 86.2
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-271 939.5 529 86.2
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.5e-271 939.1 529 85.6
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.5e-271 939.1 529 85.1
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 2.5e-271 938.3 530 85.8
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 7.3e-271 936.8 529 85.1
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.2e-270 936.0 529 84.9
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 1.2e-270 936.0 529 85.1
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 4.7e-270 934.1 529 84.9
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 4.7e-270 934.1 529 84.5
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 6.2e-270 933.7 530 85.5
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 4.0e-269 931.0 528 85.4
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 4.0e-269 931.0 529 84.3
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.8e-269 930.2 536 84.1
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 8.9e-269 929.9 529 84.9
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.5e-268 929.1 529 84.3
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.5e-268 929.1 530 83.2
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.5e-268 929.1 529 85.1
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 4.4e-268 927.5 529 84.3
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 4.4e-268 927.5 529 85.1
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 5.8e-268 927.2 530 84.3
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 7.6e-268 926.8 530 82.8
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 2.9e-267 924.9 530 82.8
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 2.9e-267 924.9 529 83.7
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 4.9e-267 924.1 526 83.3
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.9e-266 922.2 529 83.2
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 7.1e-266 920.2 529 83.4
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.6e-265 919.1 526 82.9
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 2.1e-265 918.7 531 81.9
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 2.7e-265 918.3 529 84.1
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 4.6e-265 917.5 530 82.8
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 2.3e-264 915.2 530 82.3
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 6.6e-264 913.7 529 82.6
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 6.6e-264 913.7 530 84.7
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.9e-263 912.1 529 83.0
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 4.3e-263 911.0 530 81.7
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 9.6e-263 909.8 529 81.9
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.6e-262 909.1 531 80.8
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 2.8e-262 908.3 530 81.7
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 2.4e-261 905.2 530 82.1
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 3.1e-261 904.8 529 83.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 3.1e-261 904.8 532 81.8
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 9.0e-261 903.3 530 81.5
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 3.4e-260 901.4 529 81.9
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 3.4e-260 901.4 530 81.3
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 4.4e-260 901.0 529 81.3
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 5.8e-260 900.6 529 81.7
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 7.6e-260 900.2 530 82.1
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 3.8e-259 897.9 529 81.3
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 6.4e-259 897.1 529 81.7
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.4e-258 896.0 551 79.1
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 4.2e-258 894.4 551 78.8
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 5.4e-258 894.0 529 80.0
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 9.3e-258 893.3 529 81.1
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 1.2e-257 892.9 529 81.1
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.2e-257 892.9 529 81.1
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 4.6e-257 891.0 530 81.7
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 3.9e-256 887.9 529 81.3
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 5.1e-256 887.5 529 81.1
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 6.6e-256 887.1 530 80.0
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 6.6e-256 887.1 529 79.4
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 8.7e-256 886.7 530 80.4
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.5e-255 885.2 530 81.1
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 3.3e-255 884.8 530 79.6
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 4.8e-254 880.9 490 88.0
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 6.2e-254 880.6 529 80.0
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 8.1e-254 880.2 530 80.4
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 1.1e-253 879.8 531 79.8
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.4e-253 879.4 530 80.2
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.2e-252 876.3 528 78.0
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.4e-250 869.4 676 66.7
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 3.2e-250 868.2 529 81.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 7.1e-250 867.1 528 77.3
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 6.7e-248 860.5 529 78.6
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.9e-243 844.3 487 84.6
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 3.2e-242 841.6 488 84.2
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.0e-240 836.6 660 66.5
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 9.3e-234 813.5 533 73.9
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.3e-231 805.1 556 70.5
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 4.2e-226 788.1 527 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 6.7e-224 780.8 525 70.1
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 3.4e-220 768.5 530 68.9
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 2.9e-219 765.4 526 69.2
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 3.3e-215 751.9 530 72.5
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.1e-213 746.9 529 66.0
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 4.7e-209 731.5 441 81.9
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 2.8e-206 722.2 525 64.6
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.6e-204 716.5 404 83.9
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 4.2e-202 708.4 527 63.9
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 4.2e-194 681.8 525 62.5
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 5.7e-191 671.4 497 65.4
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 6.3e-190 667.9 364 86.8
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 9.8e-183 644.0 489 69.1
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.8e-177 625.9 420 73.8
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.6e-169 600.1 704 52.6
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 5.8e-143 511.9 285 85.6
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.5e-138 497.3 534 52.2
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 5.6e-130 468.8 312 74.4
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 7.6e-119 431.8 528 47.5
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 4.4e-106 389.4 262 73.7
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 7.7e-103 378.6 411 50.1
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 4.7e-84 316.2 178 84.3
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 4.1e-72 276.6 148 89.9
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.0e-62 243.0 148 76.4
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 2.9e-41 174.1 131 64.9
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.1e-39 167.9 218 44.5
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 2.1e-39 167.9 104 77.9
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.0e-38 165.6 95 82.1
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 3.1e-35 154.1 94 79.8
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 5.8e-34 149.8 104 73.1
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 6.2e-20 103.2 97 57.7
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 3.1e-19 100.9 96 53.1
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 4.9e-17 93.6 46 93.5
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 3.0e-14 84.3 53 75.5
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 8.7e-14 82.8 45 86.7
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 8.7e-14 82.8 44 90.9
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 8.7e-14 82.8 44 90.9
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
VMungo0540G1605 Vigna mungo HOM05D001661 ORTHO05D001575 3.5e-07 60.8 116 32.8
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 4.6e-07 60.5 37 78.4
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 4.6e-07 60.5 37 78.4
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 6.0e-07 60.1 143 32.2
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 1.0e-06 59.3 47 57.4
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.0e-06 59.3 41 68.3
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 2.3e-06 58.2 65 44.6
Glyma.13G255900 Glycine max HOM05D001661 ORTHO05D001575 3.9e-06 57.4 116 31.9
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 3.9e-06 57.4 190 25.3


User provided reference genes

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